Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACTR3_chr2_113885089_113967596	0/0	t0023	5333	1	1	0	0	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0024	5332	1	1	0	0	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0025	5333	1	0	1	0	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0026	5333	1	1	0	0	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0027	5333	1	0	0	1	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0028	5333	1	1	0	0	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0029	5333	1	0	1	0	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0030	5333	1	0	0	0	0	1	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0031	5332	1	0	0	1	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0032	5332	1	0	0	1	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0033	5332	1	0	0	1	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0034	5332	1	1	0	0	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0035	5332	1	1	0	0	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0036	5334	1	0	0	0	0	1	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0037	5332	1	0	0	1	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0038	5333	1	0	0	1	0	0	copy fasta	ACTR3	chr2	113885089	113967596
ACTR3_chr2_113885089_113967596	0/0	t0039	5333	1	0	0	0	0	1	copy fasta	ACTR3	chr2	113885089	113967596
ACTR5_chr20_38743460_38777520	1/1	t0001	724	305	59	55	144	14	31	copy fasta	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	0/0	t0002	724	23	7	0	11	0	5	copy fasta	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	0/0	t0003	724	18	0	5	12	0	1	copy fasta	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	0/0	t0004	724	11	6	1	0	2	2	copy fasta	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	0/0	t0005	724	5	3	1	0	1	0	copy fasta	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	0/0	t0006	724	2	0	0	0	1	1	copy fasta	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	0/0	t0007	724	1	0	0	1	0	0	copy fasta	ACTR5	chr20	38743460	38777520
ACTR5_chr20_38743460_38777520	0/0	t0008	724	1	1	0	0	0	0	copy fasta	ACTR5	chr20	38743460	38777520
ACTR6_chr12_100195815_100229424	1/1	t0001	547	215	73	39	67	10	24	copy fasta	ACTR6	chr12	100195815	100229424
ACTR6_chr12_100195815_100229424	0/0	t0002	547	21	12	3	6	0	0	copy fasta	ACTR6	chr12	100195815	100229424
ACTR6_chr12_100195815_100229424	0/0	t0003	547	3	3	0	0	0	0	copy fasta	ACTR6	chr12	100195815	100229424
ACTR6_chr12_100195815_100229424	0/0	t0004	547	1	1	0	0	0	0	copy fasta	ACTR6	chr12	100195815	100229424
ACTR6_chr12_100195815_100229424	0/0	t0005	547	1	0	0	1	0	0	copy fasta	ACTR6	chr12	100195815	100229424
ACTR6_chr12_100195815_100229424	0/0	t0006	547	1	1	0	0	0	0	copy fasta	ACTR6	chr12	100195815	100229424
ACTR8_chr3_53862066_53887152	0/0	t0001	1704	173	35	22	98	3	15	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/1	t0002	1704	140	30	44	44	7	14	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	t0003	1705	76	13	6	46	2	9	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	t0004	1704	18	0	0	17	0	1	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	t0005	1705	3	2	0	0	0	1	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	t0006	1704	2	0	2	0	0	0	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	t0007	1705	2	0	0	2	0	0	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	t0008	1705	2	2	0	0	0	0	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	t0009	1704	2	2	0	0	0	0	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	t0010	1704	2	2	0	0	0	0	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	t0011	1704	1	1	0	0	0	0	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	t0012	1704	1	0	0	1	0	0	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	t0013	1704	1	1	0	0	0	0	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	t0014	1704	1	1	0	0	0	0	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	t0015	1704	1	1	0	0	0	0	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	t0016	1704	1	1	0	0	0	0	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	t0017	1705	1	1	0	0	0	0	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	0/0	t0018	1705	1	1	0	0	0	0	copy fasta	ACTR8	chr3	53862066	53887152
ACTR8_chr3_53862066_53887152	1/0	t0019	1705	1	0	0	0	0	0	copy fasta	ACTR8	chr3	53862066	53887152