JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C2CD4C_chr19_400445_414147	0/0	t0092	1834	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0093	1834	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0094	1834	1	0	0	0	1	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0095	1834	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0096	1834	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0097	1835	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0098	1839	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0099	1834	1	0	0	0	0	1	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0100	1834	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0101	1834	1	0	1	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0102	1834	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0103	1834	1	0	1	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0104	1839	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0105	1834	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0106	1834	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0107	1839	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0108	1834	1	0	0	0	0	1	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0109	1834	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0110	1834	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0111	1834	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0112	1834	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0113	1835	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0114	1834	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0115	1834	1	0	0	0	0	1	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0116	1834	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0117	1834	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0118	1839	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0119	1839	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0120	1834	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0121	1834	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0122	1834	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0123	1835	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0124	1834	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0125	1834	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0126	1835	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0127	1835	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0128	1834	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0129	1834	1	0	1	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0130	1834	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0131	1839	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0132	1834	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0133	1835	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0134	1839	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0135	1834	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0136	1834	1	0	1	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0137	1834	1	0	1	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0138	1834	1	0	0	0	0	1	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0139	1834	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0140	1834	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0141	1834	1	0	0	0	0	1	copy fasta	C2CD4C	chr19	400445	414147