JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF514_chr2_95140000_95164848	0/0	t0057	4941	1	0	1	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0058	4941	1	0	1	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0059	4940	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0060	4940	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0061	4940	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0062	4940	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0063	4964	1	0	0	1	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0064	4964	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0065	4964	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0066	4988	1	0	0	1	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0067	4917	1	0	1	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0068	4942	1	0	1	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0069	4941	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0070	4987	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0071	4963	1	0	0	1	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0072	4987	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0073	4987	1	0	0	1	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0074	4975	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0075	4965	1	0	0	0	0	1	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0076	4964	1	0	0	0	0	1	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0077	4988	1	0	0	0	0	1	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0078	5012	1	0	0	1	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0079	4966	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0080	4965	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0081	4965	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0082	4965	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0083	4986	1	0	0	1	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0084	4985	1	0	0	0	1	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0085	4953	1	0	1	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF516_chr18_76352682_76500242	0/0	t0001	5192	22	0	5	7	2	8	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0002	5192	19	0	5	12	0	2	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0003	5192	10	1	2	3	2	2	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0004	5192	6	0	0	4	0	2	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0005	5194	6	0	0	6	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0006	5192	6	0	0	6	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0007	5187	5	0	0	5	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0008	5187	5	5	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0009	5187	5	0	0	5	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0010	5191	5	1	2	2	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0011	5187	4	0	0	4	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0012	5194	4	0	1	3	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0013	5193	4	0	3	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0014	5192	4	1	1	0	0	2	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0015	5187	3	1	0	0	0	2	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0016	5189	3	0	0	3	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0017	5187	3	0	0	1	1	1	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0018	5187	3	0	2	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0019	5187	3	0	0	3	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0020	5196	3	1	0	1	0	1	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	t0021	5187	3	0	1	0	0	2	copy fasta	ZNF516	chr18	76352682	76500242