JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF517_chr8_144793913_144815084	0/0	t0014	1756	3	3	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0015	1756	3	3	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0016	1756	3	0	0	3	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0017	1761	2	2	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0018	1764	2	0	0	2	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0019	1764	2	1	0	1	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0020	1756	2	1	0	1	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0021	1756	2	2	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0022	1774	1	1	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0023	1762	1	1	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0024	1756	1	0	0	0	0	1	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0025	1760	1	1	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0026	1757	1	1	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0027	1760	1	1	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0028	1760	1	1	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0029	1760	1	1	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0030	1755	1	0	1	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0031	1756	1	1	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0032	1756	1	1	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0033	1757	1	1	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0034	1756	1	0	1	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0035	1756	1	1	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0036	1756	1	0	1	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0037	1755	1	1	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0038	1757	1	1	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0039	1760	1	1	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0040	1761	1	0	0	0	0	1	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0041	1762	1	0	0	1	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0042	1760	1	1	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0043	1754	1	1	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0044	1756	1	1	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	t0045	1757	1	1	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF518A_chr10_96125297_96168759	0/0	t0001	3895	131	7	24	80	4	16	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	1/0	t0002	3894	57	51	4	0	0	1	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	t0003	3894	50	9	0	37	0	4	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	t0004	3895	37	1	15	3	6	12	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/1	t0005	3894	34	12	15	0	4	2	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	t0006	3894	26	0	0	26	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	t0007	3875	12	0	4	6	0	2	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	t0008	3895	8	1	7	0	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	t0009	3894	7	1	2	0	1	3	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	t0010	3875	4	0	2	0	1	1	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	t0011	3895	3	0	0	3	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	t0012	3894	3	3	0	0	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	t0013	3895	2	0	0	2	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	t0014	3875	2	0	0	0	0	2	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	t0015	3894	2	0	1	0	0	1	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	t0016	3895	2	0	2	0	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	t0017	3894	2	1	1	0	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	t0018	3895	1	0	0	1	0	0	copy fasta	ZNF518A	chr10	96125297	96168759