JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF518A_chr10_96125297_96168759	0/0	t0019	3894	1	1	0	0	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	t0020	3894	1	0	0	1	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	t0021	3895	1	0	0	1	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	t0022	3894	1	1	0	0	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	t0023	3895	1	0	0	1	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	t0024	3875	1	1	0	0	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	t0025	3894	1	1	0	0	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	t0026	3895	1	0	1	0	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	t0027	3895	1	1	0	0	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	t0028	3894	1	1	0	0	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	t0029	3895	1	0	0	1	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518B_chr4_10434880_10462426	0/0	t0001	3737	74	3	23	32	5	11	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/1	t0002	3726	62	9	11	32	6	3	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0003	3730	60	25	6	24	0	5	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0004	3730	51	1	7	40	1	2	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0005	3734	34	0	0	30	0	4	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0006	3734	15	14	1	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0007	3731	12	0	4	4	0	4	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0008	3724	10	0	0	10	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0009	3737	7	0	5	1	0	1	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0010	3736	6	4	0	2	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0011	3727	6	1	3	1	0	1	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0012	3731	5	0	5	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0013	3738	4	4	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0014	3741	4	4	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0015	3730	4	1	1	0	0	2	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0016	3737	4	0	0	0	3	1	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	1/0	t0017	3730	3	2	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0018	3736	3	0	0	3	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0019	3737	3	0	0	3	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0020	3726	3	3	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0021	3740	3	3	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0022	3726	3	0	3	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0023	3732	2	0	1	0	0	1	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0024	3729	2	0	0	2	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0025	3733	2	0	0	2	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0026	3740	2	1	1	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0027	3737	2	2	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0028	3731	2	2	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0029	3726	2	0	0	0	0	2	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0030	3729	2	1	0	1	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0031	3730	2	0	0	2	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0032	3731	1	0	0	0	0	1	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0033	3730	1	0	1	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0034	3730	1	0	1	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0035	3731	1	0	0	1	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0036	3736	1	0	0	1	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0037	3731	1	0	1	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0038	3730	1	0	0	0	0	1	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0039	3733	1	0	0	1	0	0	copy fasta	ZNF518B	chr4	10434880	10462426