JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF518B_chr4_10434880_10462426	0/0	t0040	3734	1	0	0	1	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0041	3735	1	0	0	1	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0042	3734	1	0	0	1	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0043	3737	1	1	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0044	3736	1	1	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0045	3737	1	1	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0046	3737	1	1	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0047	3741	1	1	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0048	3742	1	1	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0049	3736	1	0	0	1	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0050	3737	1	0	1	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0051	3737	1	0	0	1	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0052	3737	1	0	0	1	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0053	3737	1	1	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0054	3737	1	1	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0055	3732	1	1	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0056	3733	1	1	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0057	3733	1	1	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0058	3730	1	1	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0059	3732	1	1	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0060	3730	1	1	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0061	3725	1	0	0	1	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0062	3726	1	0	0	1	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0063	3727	1	0	1	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0064	3730	1	0	0	0	1	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0065	3739	1	0	0	1	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0066	3730	1	1	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0067	3730	1	1	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0068	3736	1	0	0	1	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0069	3730	1	0	0	1	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0070	3730	1	0	0	1	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	t0071	3730	1	0	0	0	0	1	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF519_chr18_14094938_14137435	0/0	t0001	5138	168	21	24	115	1	7	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/1	t0002	5138	93	6	16	48	5	17	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0003	5138	35	9	9	15	0	2	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0004	5138	30	4	12	6	3	5	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0005	5138	17	3	9	0	4	1	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0006	5138	11	11	0	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0007	5138	10	8	2	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	1/0	t0008	5138	5	4	0	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0009	5138	5	5	0	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0010	5122	4	4	0	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0011	5123	4	3	1	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0012	5137	3	3	0	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0013	5138	3	0	0	3	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0014	5138	3	3	0	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0015	5139	3	3	0	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0016	5138	3	0	3	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0017	5138	2	0	0	2	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	t0018	5138	2	2	0	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435