JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF525_chr19_53360705_53391590	0/0	t0024	4694	3	0	0	3	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0025	4694	2	0	2	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0026	4699	2	2	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0027	4694	2	0	0	2	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0028	4694	2	2	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0029	4699	2	0	1	0	0	1	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0030	4700	2	0	1	0	0	1	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0031	4699	2	0	1	0	0	1	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0032	4700	1	1	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0033	4699	1	0	1	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0034	4699	1	1	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0035	4699	1	1	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0036	4699	1	0	0	1	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0037	4699	1	0	0	1	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0038	4568	1	1	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0039	4700	1	1	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0040	4694	1	1	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0041	4700	1	0	0	1	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0042	4694	1	0	0	1	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0043	4694	1	0	1	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0044	4694	1	0	0	1	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0045	4694	1	0	0	1	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0046	4694	1	0	0	0	0	1	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0047	4694	1	0	0	1	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0048	4699	1	0	0	1	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0049	4699	1	1	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0050	4700	1	1	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0051	4700	1	1	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0052	4700	1	1	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0053	4699	1	0	0	1	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0054	4699	1	0	0	1	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0055	4699	1	1	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0056	4699	1	0	0	1	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0057	4699	1	1	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0058	4699	1	1	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0059	4699	1	1	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0060	4700	1	0	0	1	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0061	4699	1	0	0	1	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0062	4568	1	1	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0063	4568	1	1	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0064	4700	1	1	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0065	4700	1	0	1	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0066	4700	1	1	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0067	4699	1	0	0	1	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0068	4699	1	0	0	1	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0069	4694	1	1	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0070	4694	1	0	0	1	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	t0071	4694	1	0	0	0	0	1	copy fasta	ZNF525	chr19	53360705	53391590
ZNF526_chr19_42215312_42233201	1/1	t0001	1970	319	72	69	121	15	40	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	t0002	1970	9	0	0	9	0	0	copy fasta	ZNF526	chr19	42215312	42233201