JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C2CD4C_chr19_400445_414147	0/0	t0142	1837	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0143	1834	1	0	1	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4D_chr1_151832818_151844820	1/0	t0001	499	232	48	44	118	6	15	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/1	t0002	499	197	42	40	70	12	32	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	t0003	499	3	3	0	0	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	t0004	499	2	0	0	2	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	t0005	499	2	0	0	2	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	t0006	499	2	2	0	0	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	t0007	499	1	0	0	1	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	t0008	499	1	0	0	1	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	t0009	499	1	1	0	0	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	t0010	499	1	0	0	0	0	1	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD5_chr12_22443583_22549542	1/1	t0001	1430	132	38	35	31	5	21	copy fasta	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	t0002	1430	16	2	4	4	1	5	copy fasta	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	t0003	1430	14	14	0	0	0	0	copy fasta	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	t0004	1430	13	13	0	0	0	0	copy fasta	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	t0005	1430	5	5	0	0	0	0	copy fasta	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	t0006	1430	5	5	0	0	0	0	copy fasta	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	t0007	1432	3	3	0	0	0	0	copy fasta	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	t0008	1430	3	1	0	2	0	0	copy fasta	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	t0009	1430	2	2	0	0	0	0	copy fasta	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	t0010	1430	1	1	0	0	0	0	copy fasta	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	t0011	1430	1	1	0	0	0	0	copy fasta	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	t0012	1430	1	1	0	0	0	0	copy fasta	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	t0013	1430	1	1	0	0	0	0	copy fasta	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	t0014	1430	1	1	0	0	0	0	copy fasta	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	t0015	1430	1	0	1	0	0	0	copy fasta	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	t0016	1430	1	0	0	1	0	0	copy fasta	C2CD5	chr12	22443583	22549542
C2CD6_chr2_201482421_201624178	1/1	t0001	240	270	84	52	94	10	28	copy fasta	C2CD6	chr2	201482421	201624178
C2_chr6_31922717_31950672	0/1	t0001	352	395	92	78	168	18	38	copy fasta	C2	chr6	31922717	31950672
C2orf15_chr2_99136707_99156669	0/0	t0001	1350	181	22	37	93	7	22	copy fasta	C2orf15	chr2	99136707	99156669
C2orf15_chr2_99136707_99156669	1/1	t0002	1352	92	28	25	12	6	19	copy fasta	C2orf15	chr2	99136707	99156669
C2orf15_chr2_99136707_99156669	0/0	t0003	1350	59	6	6	45	1	1	copy fasta	C2orf15	chr2	99136707	99156669
C2orf15_chr2_99136707_99156669	0/0	t0004	1352	24	7	1	16	0	0	copy fasta	C2orf15	chr2	99136707	99156669
C2orf15_chr2_99136707_99156669	0/0	t0005	1353	22	16	4	1	0	1	copy fasta	C2orf15	chr2	99136707	99156669
C2orf15_chr2_99136707_99156669	0/0	t0006	1351	6	5	0	1	0	0	copy fasta	C2orf15	chr2	99136707	99156669
C2orf15_chr2_99136707_99156669	0/0	t0007	1351	4	0	0	4	0	0	copy fasta	C2orf15	chr2	99136707	99156669
C2orf15_chr2_99136707_99156669	0/0	t0008	1349	4	0	0	3	0	1	copy fasta	C2orf15	chr2	99136707	99156669
C2orf15_chr2_99136707_99156669	0/0	t0009	1350	3	0	3	0	0	0	copy fasta	C2orf15	chr2	99136707	99156669
C2orf15_chr2_99136707_99156669	0/0	t0010	1352	3	3	0	0	0	0	copy fasta	C2orf15	chr2	99136707	99156669
C2orf15_chr2_99136707_99156669	0/0	t0011	1350	2	2	0	0	0	0	copy fasta	C2orf15	chr2	99136707	99156669
C2orf15_chr2_99136707_99156669	0/0	t0012	1349	2	0	1	1	0	0	copy fasta	C2orf15	chr2	99136707	99156669
C2orf15_chr2_99136707_99156669	0/0	t0013	1350	2	0	0	2	0	0	copy fasta	C2orf15	chr2	99136707	99156669
C2orf15_chr2_99136707_99156669	0/0	t0014	1350	1	1	0	0	0	0	copy fasta	C2orf15	chr2	99136707	99156669
C2orf15_chr2_99136707_99156669	0/0	t0015	1352	1	0	0	1	0	0	copy fasta	C2orf15	chr2	99136707	99156669
C2orf15_chr2_99136707_99156669	0/0	t0016	1350	1	0	1	0	0	0	copy fasta	C2orf15	chr2	99136707	99156669
C2orf15_chr2_99136707_99156669	0/0	t0017	1353	1	1	0	0	0	0	copy fasta	C2orf15	chr2	99136707	99156669
C2orf15_chr2_99136707_99156669	0/0	t0018	1349	1	0	0	1	0	0	copy fasta	C2orf15	chr2	99136707	99156669
C2orf15_chr2_99136707_99156669	0/0	t0019	1351	1	1	0	0	0	0	copy fasta	C2orf15	chr2	99136707	99156669
C2orf15_chr2_99136707_99156669	0/0	t0020	1350	1	0	1	0	0	0	copy fasta	C2orf15	chr2	99136707	99156669