JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF526_chr19_42215312_42233201	0/0	t0003	1970	3	2	1	0	0	0	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	t0004	1970	2	0	0	2	0	0	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	t0005	1970	2	1	1	0	0	0	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	t0006	1970	1	1	0	0	0	0	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	t0007	1970	1	0	0	0	1	0	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	t0008	1970	1	0	1	0	0	0	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	t0009	1970	1	0	0	1	0	0	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	t0010	1983	1	1	0	0	0	0	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	t0011	1970	1	0	0	1	0	0	copy fasta	ZNF526	chr19	42215312	42233201
ZNF526_chr19_42215312_42233201	0/0	t0012	1970	1	1	0	0	0	0	copy fasta	ZNF526	chr19	42215312	42233201
ZNF527_chr19_37366099_37398066	0/1	t0001	3357	109	16	23	57	4	8	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0002	3347	96	20	7	58	1	10	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0003	3361	62	9	11	31	4	7	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0004	3357	21	4	6	9	0	2	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0005	3357	19	0	6	10	0	3	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0006	3355	11	11	0	0	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0007	3359	10	0	6	3	0	1	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0008	3357	9	1	2	0	1	5	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	1/0	t0009	3357	8	6	0	1	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0010	3361	7	0	0	7	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0011	3360	7	7	0	0	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0012	3346	4	2	2	0	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0013	3359	4	0	4	0	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0014	3358	3	3	0	0	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0015	3357	2	1	1	0	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0016	3357	2	0	0	0	2	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0017	3362	2	2	0	0	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0018	3358	2	2	0	0	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0019	3347	2	0	0	2	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0020	3356	2	0	0	1	0	1	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0021	3361	1	0	0	0	0	1	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0022	3345	1	0	1	0	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0023	3357	1	0	1	0	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0024	3357	1	0	0	1	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0025	3357	1	0	0	1	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0026	3361	1	0	0	0	1	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0027	3361	1	0	1	0	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0028	3357	1	0	1	0	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0029	3361	1	0	0	1	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0030	3346	1	0	0	1	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0031	3358	1	1	0	0	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0032	3347	1	0	0	1	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0033	3347	1	0	0	1	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0034	3363	1	0	0	1	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0035	3364	1	1	0	0	0	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF527_chr19_37366099_37398066	0/0	t0036	3356	1	0	0	0	1	0	copy fasta	ZNF527	chr19	37366099	37398066
ZNF528_chr19_52392849_52423401	0/1	t0001	2110	173	18	42	73	12	27	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	1/0	t0002	2108	162	38	12	100	1	10	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	t0003	2110	87	13	11	49	3	11	copy fasta	ZNF528	chr19	52392849	52423401
ZNF528_chr19_52392849_52423401	0/0	t0004	2108	9	0	7	2	0	0	copy fasta	ZNF528	chr19	52392849	52423401