JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF534_chr19_52424148_52447499	0/0	t0057	3201	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0058	3201	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0059	3201	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0060	3201	1	0	1	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0061	3201	1	0	1	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0062	3201	1	1	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0063	3201	1	1	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0064	3201	1	0	1	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0065	3201	1	1	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0066	3201	1	0	1	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0067	3201	1	0	1	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0068	3200	1	0	0	0	0	1	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0069	3218	1	1	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0070	3201	1	1	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0071	3200	1	1	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0072	3200	1	1	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0073	3217	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0074	3201	1	1	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0075	3218	1	0	0	0	0	1	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0076	3218	1	1	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0077	3217	1	0	1	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0078	3202	1	1	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0079	3201	1	1	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0080	3202	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0081	3200	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0082	3201	1	1	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	t0083	3200	1	0	1	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF536_chr19_30367384_30563059	1/1	t0001	1071	135	62	19	34	1	17	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	t0002	1071	59	14	13	26	0	6	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	t0003	1071	10	0	8	0	1	1	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	t0004	1071	3	3	0	0	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	t0005	1071	1	1	0	0	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	t0006	1071	1	1	0	0	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	t0007	1071	1	0	0	0	0	1	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	t0008	1071	1	1	0	0	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	t0009	1071	1	0	0	0	0	1	copy fasta	ZNF536	chr19	30367384	30563059
ZNF540_chr19_37589876_37619179	1/1	t0001	1209	306	68	68	128	11	29	copy fasta	ZNF540	chr19	37589876	37619179
ZNF540_chr19_37589876_37619179	0/0	t0002	1209	10	10	0	0	0	0	copy fasta	ZNF540	chr19	37589876	37619179
ZNF540_chr19_37589876_37619179	0/0	t0003	1209	9	9	0	0	0	0	copy fasta	ZNF540	chr19	37589876	37619179
ZNF540_chr19_37589876_37619179	0/0	t0004	1209	8	0	0	8	0	0	copy fasta	ZNF540	chr19	37589876	37619179
ZNF540_chr19_37589876_37619179	0/0	t0005	1206	4	4	0	0	0	0	copy fasta	ZNF540	chr19	37589876	37619179
ZNF540_chr19_37589876_37619179	0/0	t0006	1209	3	0	1	0	1	1	copy fasta	ZNF540	chr19	37589876	37619179
ZNF540_chr19_37589876_37619179	0/0	t0007	1209	2	1	1	0	0	0	copy fasta	ZNF540	chr19	37589876	37619179
ZNF540_chr19_37589876_37619179	0/0	t0008	1209	1	1	0	0	0	0	copy fasta	ZNF540	chr19	37589876	37619179
ZNF540_chr19_37589876_37619179	0/0	t0009	1209	1	0	0	1	0	0	copy fasta	ZNF540	chr19	37589876	37619179
ZNF540_chr19_37589876_37619179	0/0	t0010	1209	1	1	0	0	0	0	copy fasta	ZNF540	chr19	37589876	37619179
ZNF540_chr19_37589876_37619179	0/0	t0011	1209	1	0	0	1	0	0	copy fasta	ZNF540	chr19	37589876	37619179
ZNF541_chr19_47515690_47578148	1/1	t0001	846	291	81	59	108	12	29	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	t0002	846	3	2	1	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	t0003	846	1	0	0	0	0	1	copy fasta	ZNF541	chr19	47515690	47578148