JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF541_chr19_47515690_47578148	0/0	t0004	846	1	0	1	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	t0005	846	1	1	0	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	t0006	846	1	0	1	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF543_chr19_57315472_57335770	0/0	t0001	1888	141	14	26	75	8	18	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/1	t0002	1886	106	8	21	61	3	12	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0003	1887	52	24	15	7	4	2	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0004	1887	47	3	8	34	0	2	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0005	1887	19	5	3	8	0	3	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0006	1887	9	0	0	9	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0007	1887	6	0	2	3	1	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0008	1888	6	6	0	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0009	1886	5	5	0	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0010	1886	4	4	0	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0011	1888	4	0	0	4	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0012	1886	4	3	1	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0013	1887	4	0	0	3	0	1	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0014	1888	4	1	2	1	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0015	1885	3	0	1	1	0	1	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0016	1886	3	0	0	1	0	2	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	1/0	t0017	1888	2	0	0	0	0	1	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0018	1887	2	0	0	2	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0019	1888	2	2	0	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0020	1886	2	2	0	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0021	1886	2	0	1	0	1	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0022	1887	2	2	0	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0023	1887	2	0	1	0	0	1	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0024	1887	2	2	0	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0025	1886	2	2	0	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0026	1888	2	2	0	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0027	1886	2	0	0	2	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0028	1887	2	2	0	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0029	1887	2	0	2	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0030	1887	1	1	0	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0031	1887	1	1	0	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0032	1887	1	1	0	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0033	1886	1	0	0	1	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0034	1886	1	0	0	1	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0035	1886	1	0	0	0	1	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0036	1888	1	0	0	1	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0037	1887	1	1	0	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0038	1889	1	0	1	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0039	1887	1	0	0	1	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0040	1887	1	1	0	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0041	1886	1	0	0	1	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0042	1888	1	1	0	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0043	1887	1	1	0	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0044	1886	1	1	0	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0045	1888	1	0	0	0	0	1	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	t0046	1886	1	1	0	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF544_chr19_58223914_58268644	1/0	t0001	1155	140	28	21	69	3	18	copy fasta	ZNF544	chr19	58223914	58268644