JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF548_chr19_57384854_57407992	0/0	t0027	3350	1	0	1	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0028	3350	1	0	1	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0029	3351	1	0	0	1	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0030	3350	1	1	0	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0031	3350	1	1	0	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0032	3350	1	0	0	1	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0033	3350	1	0	0	1	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0034	3350	1	0	0	1	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0035	3350	1	0	0	1	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0036	3350	1	1	0	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0037	3350	1	0	0	0	1	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0038	3350	1	0	0	0	0	1	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0039	3350	1	0	0	1	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0040	3350	1	0	0	1	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0041	3350	1	1	0	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0042	3350	1	0	0	1	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0043	3350	1	0	0	0	0	1	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0044	3350	1	1	0	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0045	3351	1	1	0	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0046	3350	1	1	0	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	t0047	3351	1	0	1	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF549_chr19_57522356_57545876	1/1	t0001	2168	363	79	66	163	16	37	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	t0002	2167	10	10	0	0	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	t0003	2168	2	2	0	0	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	t0004	2167	2	1	1	0	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	t0005	2168	1	0	1	0	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	t0006	2168	1	0	0	1	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	t0007	2167	1	1	0	0	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	t0008	2168	1	1	0	0	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	t0009	2168	1	1	0	0	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	t0010	2168	1	0	0	1	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	t0011	2168	1	0	0	0	0	1	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	t0012	2168	1	0	0	1	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	t0013	2168	1	0	0	1	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	t0014	2168	1	0	0	1	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	t0015	2168	1	0	0	1	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	t0016	2168	1	1	0	0	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	t0017	2168	1	0	0	1	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	t0018	2168	1	1	0	0	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	t0019	2168	1	0	1	0	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	t0020	2167	1	1	0	0	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	t0021	2168	1	0	1	0	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF550_chr19_57536838_57564863	0/1	t0001	5319	160	17	27	82	4	29	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	1/0	t0002	5319	57	8	15	24	3	6	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0003	5316	55	13	12	22	1	7	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0004	5317	37	17	4	15	1	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0005	5319	9	0	0	9	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0006	5319	8	8	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0007	5315	7	0	6	0	1	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0008	5319	5	2	2	0	1	0	copy fasta	ZNF550	chr19	57536838	57564863