JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C2orf15_chr2_99136707_99156669	0/0	t0021	1352	1	0	1	0	0	0	copy fasta	C2orf15	chr2	99136707	99156669
C2orf15_chr2_99136707_99156669	0/0	t0022	1350	1	1	0	0	0	0	copy fasta	C2orf15	chr2	99136707	99156669
C2orf15_chr2_99136707_99156669	0/0	t0023	1349	1	1	0	0	0	0	copy fasta	C2orf15	chr2	99136707	99156669
C2orf16_chr2_27532386_27587722	1/1	t0001	237	313	62	53	144	16	36	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	t0002	237	11	8	3	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	t0003	237	2	0	2	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf42_chr2_70144885_70196019	1/1	t0001	800	343	95	66	145	6	29	copy fasta	C2orf42	chr2	70144885	70196019
C2orf42_chr2_70144885_70196019	0/0	t0002	800	1	1	0	0	0	0	copy fasta	C2orf42	chr2	70144885	70196019
C2orf42_chr2_70144885_70196019	0/0	t0003	800	1	0	0	0	0	1	copy fasta	C2orf42	chr2	70144885	70196019
C2orf42_chr2_70144885_70196019	0/0	t0004	800	1	0	0	1	0	0	copy fasta	C2orf42	chr2	70144885	70196019
C2orf49_chr2_105332540_105354211	0/0	t0001	3888	95	16	8	64	2	5	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0002	3890	70	2	16	44	1	7	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	1/0	t0003	3889	62	9	9	34	1	8	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0004	3892	37	8	10	5	4	10	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0005	3890	32	10	3	14	0	5	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0006	3888	19	0	7	9	2	1	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0007	3893	11	2	0	8	1	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0008	3891	10	7	0	3	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0009	3894	8	2	4	0	0	2	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/1	t0010	3886	6	1	4	0	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0011	3889	6	0	1	0	2	3	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0012	3892	6	6	0	0	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0013	3892	6	0	3	0	2	1	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0014	3888	3	2	1	0	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0015	3889	3	0	0	3	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0016	3888	2	2	0	0	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0017	3892	2	0	0	1	0	1	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0018	3896	2	2	0	0	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0019	3892	2	2	0	0	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0020	3892	2	2	0	0	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0021	3888	2	2	0	0	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0022	3892	2	1	1	0	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0023	3892	2	2	0	0	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0024	3890	2	2	0	0	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0025	3892	1	1	0	0	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0026	3889	1	1	0	0	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0027	3892	1	1	0	0	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0028	3890	1	0	0	1	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0029	3890	1	0	0	0	1	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0030	3890	1	0	0	1	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0031	3890	1	0	0	1	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0032	3890	1	1	0	0	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0033	3888	1	1	0	0	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0034	3894	1	1	0	0	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0035	3886	1	0	0	1	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0036	3889	1	0	1	0	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0037	3896	1	1	0	0	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0038	3894	1	1	0	0	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0039	3890	1	1	0	0	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	t0040	3891	1	1	0	0	0	0	copy fasta	C2orf49	chr2	105332540	105354211