JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF550_chr19_57536838_57564863	0/0	t0009	5317	5	0	3	2	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0010	5319	5	5	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0011	5325	5	5	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0012	5319	4	0	0	4	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0013	5317	4	0	0	4	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0014	5316	3	0	1	0	2	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0015	5319	3	2	0	0	1	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0016	5319	3	0	0	3	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0017	5319	3	0	0	3	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0018	5316	3	2	1	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0019	5316	2	0	2	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0020	5319	2	2	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0021	5319	2	0	0	2	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0022	5317	2	0	0	2	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0023	5321	2	2	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0024	5321	2	2	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0025	5319	1	0	0	0	1	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0026	5316	1	0	0	1	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0027	5317	1	1	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0028	5319	1	0	1	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0029	5319	1	0	0	1	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0030	5319	1	0	0	1	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0031	5319	1	0	0	1	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0032	5325	1	1	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0033	5325	1	1	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0034	5317	1	0	0	0	0	1	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0035	5317	1	1	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0036	5319	1	0	1	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0037	5319	1	1	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0038	5319	1	0	0	1	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0039	5319	1	1	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0040	5316	1	0	0	1	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0041	5319	1	1	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0042	5319	1	0	0	0	0	1	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0043	5319	1	0	0	0	1	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0044	5325	1	1	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0045	5325	1	1	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	t0046	5319	1	0	1	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF551_chr19_57676977_57695648	1/0	t0001	2548	134	2	35	77	1	18	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0002	2534	102	17	24	43	6	12	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0003	2546	91	10	9	61	5	6	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0004	2544	25	14	1	8	0	2	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0005	2542	17	17	0	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0006	2546	8	0	4	4	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0007	2550	6	5	1	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0008	2534	5	5	0	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/1	t0009	2550	5	0	1	0	0	3	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0010	2546	5	4	0	1	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0011	2548	4	3	1	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	t0012	2548	4	0	1	1	2	0	copy fasta	ZNF551	chr19	57676977	57695648