JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF554_chr19_2814868_2841735	0/0	t0009	2089	8	6	0	0	1	1	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0010	2089	8	7	1	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	1/0	t0011	2088	7	1	3	0	2	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0012	2006	4	4	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0013	2088	4	0	1	0	2	1	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0014	2007	3	0	0	3	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0015	2089	3	0	0	2	1	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0016	2087	3	3	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0017	2091	3	2	0	1	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0018	2091	2	0	1	1	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0019	2090	2	0	0	2	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0020	2089	2	2	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0021	2007	2	0	0	2	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0022	2089	2	1	1	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0023	2090	2	0	0	0	0	2	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0024	2089	2	2	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0025	2089	2	0	0	2	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0026	2088	2	1	0	1	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0027	2089	2	0	0	2	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0028	2089	2	2	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0029	2006	1	0	0	0	0	1	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0030	2089	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0031	2006	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0032	2090	1	0	0	1	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0033	2090	1	0	0	0	0	1	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0034	2090	1	0	1	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0035	2088	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0036	2090	1	0	0	0	0	1	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0037	2089	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0038	2089	1	0	0	1	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0039	2089	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0040	2091	1	0	0	0	0	1	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0041	2088	1	0	0	1	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0042	2006	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0043	2090	1	0	0	1	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0044	2089	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0045	2006	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0046	2090	1	0	0	0	1	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0047	2090	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0048	2089	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0049	2090	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0050	2090	1	0	0	1	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0051	2088	1	0	0	1	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0052	2090	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0053	2090	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0054	2089	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	t0055	2089	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF555_chr19_2836475_2865471	0/0	t0001	6620	109	4	20	69	3	13	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0002	6620	108	14	21	54	4	15	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	1/0	t0003	6618	18	9	6	0	2	0	copy fasta	ZNF555	chr19	2836475	2865471