JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF555_chr19_2836475_2865471	0/1	t0004	6620	13	0	5	0	3	4	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0005	6620	13	11	2	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0006	6618	9	8	1	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0007	6618	5	5	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0008	6620	5	0	0	5	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0009	6620	5	0	5	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0010	6620	4	4	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0011	6621	4	2	1	1	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0012	6620	4	2	0	0	1	1	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0013	6619	4	4	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0014	6620	3	0	3	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0015	6620	3	0	0	3	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0016	6620	3	3	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0017	6618	3	3	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0018	6618	2	0	2	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0019	6618	2	0	1	0	1	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0020	6620	2	2	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0021	6620	2	0	0	2	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0022	6620	2	0	0	2	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0023	6621	2	0	0	1	0	1	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0024	6620	2	0	0	0	0	2	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0025	6620	2	2	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0026	6620	1	0	0	1	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0027	6619	1	1	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0028	6619	1	1	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0029	6617	1	1	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0030	6618	1	1	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0031	6620	1	1	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0032	6620	1	0	0	1	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0033	6619	1	1	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0034	6620	1	0	0	1	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0035	6620	1	0	0	1	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0036	6620	1	0	1	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0037	6620	1	0	0	1	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0038	6620	1	0	0	1	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0039	6620	1	0	0	1	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0040	6620	1	0	0	0	0	1	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0041	6620	1	1	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0042	6620	1	1	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0043	6620	1	1	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0044	6619	1	0	0	0	0	1	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0045	6620	1	0	0	0	0	1	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0046	6620	1	0	0	1	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0047	6620	1	1	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0048	6619	1	0	0	0	0	1	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0049	6619	1	1	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0050	6620	1	0	0	1	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0051	6620	1	1	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	t0052	6621	1	1	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF556_chr19_2862335_2888445	0/0	t0001	5223	46	0	9	37	0	0	copy fasta	ZNF556	chr19	2862335	2888445