JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF556_chr19_2862335_2888445	1/0	t0002	5204	22	0	8	12	0	1	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0003	5221	13	0	1	3	1	8	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0004	5223	13	1	4	8	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0005	5206	12	0	7	1	0	4	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0006	5221	12	0	1	11	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0007	5225	12	0	0	12	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0008	5227	12	0	2	9	1	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0009	5219	9	2	5	1	0	1	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0010	5204	8	0	1	4	0	3	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0011	5225	8	0	1	7	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0012	5205	6	0	3	0	1	2	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0013	5206	6	1	0	1	0	4	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/1	t0014	5214	5	0	3	0	1	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0015	5202	5	0	0	5	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0016	5219	5	0	2	3	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0017	5223	4	0	4	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0018	5213	4	0	4	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0019	5212	4	0	0	4	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0020	5223	3	0	0	3	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0021	5207	3	0	0	3	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0022	5229	3	0	0	3	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0023	5221	3	0	0	3	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0024	5223	3	0	0	3	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0025	5228	3	3	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0026	5204	2	0	0	0	0	2	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0027	5206	2	0	0	2	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0028	5216	2	0	0	0	2	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0029	5210	2	0	0	2	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0030	5204	2	0	1	0	1	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0031	5218	2	0	0	2	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0032	5204	2	2	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0033	5204	2	2	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0034	5204	2	0	0	0	0	2	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0035	5202	2	2	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0036	5209	2	2	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0037	5205	2	0	0	2	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0038	5222	2	0	0	1	0	1	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0039	5224	2	0	0	2	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0040	5229	2	0	1	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0041	5227	2	0	0	2	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0042	5215	2	0	0	2	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0043	5213	2	0	0	2	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0044	5205	2	0	1	0	1	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0045	5217	2	1	1	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0046	5213	2	0	1	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0047	5219	2	0	2	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0048	5213	2	0	2	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0049	5206	2	0	1	0	1	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0050	5219	2	0	2	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0051	5214	2	0	0	0	0	2	copy fasta	ZNF556	chr19	2862335	2888445