JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF556_chr19_2862335_2888445	0/0	t0052	5210	2	2	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0053	5206	2	1	1	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0054	5224	2	2	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0055	5226	2	2	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0056	5206	2	2	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0057	5225	2	0	0	0	0	2	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0058	5204	1	0	1	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0059	5213	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0060	5205	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0061	5205	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0062	5205	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0063	5222	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0064	5204	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0065	5204	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0066	5208	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0067	5203	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0068	5205	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0069	5212	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0070	5216	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0071	5218	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0072	5222	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0073	5224	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0074	5220	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0075	5222	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0076	5218	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0077	5220	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0078	5222	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0079	5224	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0080	5218	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0081	5216	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0082	5221	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0083	5205	1	0	1	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0084	5204	1	0	1	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0085	5210	1	0	0	0	1	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0086	5216	1	0	0	0	1	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0087	5212	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0088	5214	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0089	5204	1	0	0	0	1	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0090	5210	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0091	5206	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0092	5207	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0093	5213	1	0	1	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0094	5213	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0095	5221	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0096	5205	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0097	5205	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0098	5205	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0099	5205	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0100	5208	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0101	5214	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445