JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF556_chr19_2862335_2888445	0/0	t0152	5221	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0153	5223	1	0	0	0	0	1	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0154	5212	1	0	0	0	0	1	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0155	5210	1	0	0	0	0	1	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0156	5219	1	0	1	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0157	5225	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0158	5225	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0159	5221	1	0	0	0	0	1	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0160	5219	1	0	0	0	1	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0161	5221	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0162	5217	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0163	5221	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0164	5223	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0165	5214	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0166	5205	1	0	0	0	0	1	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0167	5207	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0168	5221	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0169	5205	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0170	5213	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0171	5205	1	0	1	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0172	5204	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0173	5204	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0174	5229	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0175	5224	1	0	0	0	0	1	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0176	5219	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0177	5227	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0178	5225	1	0	0	0	0	1	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0179	5213	1	0	1	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0180	5215	1	0	0	0	1	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0181	5205	1	0	0	0	0	1	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0182	5225	1	0	0	0	0	1	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0183	5223	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0184	5222	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0185	5223	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0186	5225	1	0	1	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0187	5223	1	0	0	0	1	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0188	5204	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0189	5212	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0190	5200	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0191	5206	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0192	5206	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0193	5210	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0194	5204	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0195	5204	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0196	5204	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0197	5204	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0198	5206	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0199	5226	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0200	5226	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	t0201	5210	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445