JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF557_chr19_7064703_7092968	0/0	t0035	4489	2	2	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0036	4464	2	0	0	0	0	2	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0037	4465	2	0	2	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0038	4482	2	0	1	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0039	4467	2	2	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0040	4466	2	2	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0041	4468	2	2	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0042	4467	2	0	0	2	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0043	4482	2	0	1	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0044	4468	2	0	0	0	0	2	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0045	4466	2	0	0	2	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0046	4468	2	0	0	2	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0047	4471	2	0	0	1	0	1	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0048	4476	2	0	0	2	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0049	4480	2	0	0	2	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0050	4480	2	0	1	0	0	1	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0051	4481	2	0	1	0	1	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0052	4476	2	0	0	2	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0053	4483	2	0	1	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0054	4480	2	0	0	0	0	2	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0055	4476	2	0	2	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0056	4481	2	2	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0057	4472	2	2	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0058	4472	2	1	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0059	4479	2	2	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0060	4480	2	0	0	0	2	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0061	4466	2	0	2	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0062	4466	1	0	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0063	4480	1	0	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0064	4495	1	1	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0065	4481	1	0	0	0	0	1	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0066	4481	1	1	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0067	4481	1	1	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0068	4480	1	1	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0069	4493	1	0	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0070	4466	1	1	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0071	4484	1	1	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0072	4486	1	1	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0073	4488	1	1	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0074	4491	1	1	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0075	4481	1	0	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0076	4482	1	0	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0077	4482	1	0	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0078	4464	1	1	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0079	4484	1	1	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0080	4463	1	0	0	0	0	1	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0081	4466	1	0	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0082	4481	1	0	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0083	4477	1	0	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0084	4481	1	0	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968