JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
ZNF557_chr19_7064703_7092968	0/0	t0085	4487	1	0	0	1	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0086	4480	1	0	0	1	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0087	4481	1	0	0	1	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0088	4481	1	0	0	1	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0089	4481	1	0	0	1	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0090	4466	1	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0091	4466	1	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0092	4468	1	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0093	4470	1	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0094	4467	1	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0095	4468	1	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0096	4467	1	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0097	4468	1	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0098	4467	1	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0099	4466	1	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0100	4483	1	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0101	4482	1	0	0	1	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0102	4468	1	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0103	4461	1	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0104	4465	1	0	0	0	1	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0105	4468	1	0	0	1	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0106	4466	1	0	0	0	1	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0107	4467	1	0	0	1	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0108	4466	1	0	0	1	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0109	4481	1	0	0	0	1	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0110	4477	1	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0111	4464	1	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0112	4483	1	0	0	1	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0113	4484	1	0	0	1	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0114	4481	1	0	0	1	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0115	4486	1	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0116	4483	1	0	0	0	1	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0117	4484	1	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0118	4484	1	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0119	4474	1	0	0	1	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0120	4480	1	0	0	1	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0121	4475	1	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0122	4481	1	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0123	4480	1	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0124	4484	1	0	0	1	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0125	4485	1	0	0	1	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0126	4482	1	0	0	1	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0127	4486	1	0	0	1	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0128	4483	1	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0129	4472	1	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0130	4483	1	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0131	4470	1	0	0	1	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0132	4466	1	0	0	1	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0133	4480	1	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0134	4474	1	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968