JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF557_chr19_7064703_7092968	0/0	t0135	4481	1	1	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0136	4476	1	0	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0137	4479	1	1	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0138	4480	1	0	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0139	4479	1	0	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0140	4474	1	0	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0141	4477	1	0	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0142	4480	1	0	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0143	4482	1	0	0	0	1	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0144	4477	1	1	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0145	4485	1	0	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0146	4479	1	0	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0147	4482	1	0	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0148	4482	1	0	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0149	4481	1	0	0	0	0	1	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0150	4478	1	0	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0151	4482	1	1	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0152	4481	1	0	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0153	4484	1	0	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/1	t0154	4482	1	0	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0155	4481	1	0	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0156	4478	1	0	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0157	4479	1	0	0	0	0	1	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0158	4468	1	0	0	0	0	1	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0159	4483	1	1	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0160	4474	1	1	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0161	4473	1	1	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0162	4471	1	1	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0163	4483	1	0	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0164	4482	1	0	0	0	1	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0165	4481	1	1	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0166	4478	1	1	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	t0167	4465	1	0	0	0	1	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF558_chr19_8801170_8837304	0/0	t0001	5802	99	11	10	58	4	16	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0002	5800	84	3	15	61	0	5	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0003	5798	83	8	17	36	7	15	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0004	5802	25	0	5	15	0	5	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0005	5802	12	12	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0006	5798	10	10	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0007	5797	7	7	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0008	5803	7	6	1	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0009	5802	6	1	5	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0010	5802	5	3	0	1	0	1	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0011	5798	4	1	2	0	1	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0012	5803	4	4	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0013	5803	3	1	0	2	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0014	5802	3	0	0	3	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0015	5802	3	2	0	0	0	1	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0016	5802	3	3	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0017	5802	3	2	1	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304