JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF558_chr19_8801170_8837304	0/0	t0018	5801	2	2	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0019	5797	2	1	0	1	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0020	5798	2	0	0	2	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0021	5800	2	0	0	2	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0022	5802	2	0	1	1	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0023	5802	2	0	0	2	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0024	5801	2	0	0	2	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0025	5803	2	2	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	1/0	t0026	5800	2	0	1	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0027	5800	2	0	1	0	1	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0028	5802	2	0	1	0	0	1	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0029	5803	2	2	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0030	5798	1	0	1	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0031	5829	1	0	1	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0032	5799	1	0	1	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0033	5793	1	1	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0034	5798	1	0	1	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0035	5799	1	0	0	1	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/1	t0036	5798	1	0	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0037	5798	1	0	1	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0038	5798	1	0	1	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0039	5802	1	0	0	1	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0040	5802	1	0	0	1	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0041	5802	1	0	0	0	0	1	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0042	5802	1	0	0	1	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0043	5798	1	0	0	1	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0044	5803	1	0	0	1	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0045	5798	1	0	0	0	1	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0046	5802	1	0	1	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0047	5802	1	0	0	1	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0048	5803	1	0	0	1	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0049	5800	1	0	0	1	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0050	5801	1	1	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0051	5801	1	1	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0052	5801	1	1	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0053	5802	1	1	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0054	5802	1	1	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0055	5801	1	1	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0056	5802	1	1	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0057	5802	1	1	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0058	5801	1	1	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0059	5801	1	1	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0060	5801	1	1	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0061	5802	1	1	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0062	5802	1	1	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0063	5800	1	0	0	1	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0064	5802	1	1	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0065	5802	1	1	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0066	5803	1	1	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0067	5798	1	0	0	1	0	0	copy fasta	ZNF558	chr19	8801170	8837304