JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF558_chr19_8801170_8837304	0/0	t0068	5800	1	0	1	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0069	5800	1	0	0	0	0	1	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0070	5801	1	0	0	1	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0071	5800	1	0	0	1	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	t0072	5800	1	0	0	1	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF559_chr19_9319179_9350871	1/0	t0001	3059	115	2	25	74	6	7	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/1	t0002	3061	99	5	25	59	4	5	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0003	3059	39	27	2	8	0	2	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0004	3061	38	5	7	15	3	8	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0005	3061	23	9	7	2	0	5	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0006	3053	11	9	0	2	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0007	3060	8	8	0	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0008	3061	5	5	0	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0009	3061	5	5	0	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0010	3059	4	4	0	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0011	3060	4	4	0	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0012	3061	3	0	0	3	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0013	3059	3	0	0	0	0	3	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0014	3061	3	0	2	0	1	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0015	3058	3	2	0	0	0	1	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0016	3059	2	0	0	2	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0017	3059	2	0	0	0	0	2	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0018	3056	2	2	0	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0019	3056	2	2	0	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0020	3061	2	2	0	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0021	3061	2	0	0	0	0	2	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0022	3061	2	1	1	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0023	3061	1	1	0	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0024	3061	1	0	0	1	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0025	3027	1	0	0	1	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0026	3059	1	0	0	0	0	1	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0027	3059	1	0	1	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0028	3061	1	0	0	1	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0029	3061	1	0	0	0	0	1	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0030	3061	1	1	0	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0031	3061	1	1	0	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0032	3053	1	0	1	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0033	3061	1	1	0	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0034	3061	1	0	0	0	0	1	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0035	3058	1	1	0	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0036	3058	1	1	0	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0037	3061	1	1	0	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0038	3060	1	0	1	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF559_chr19_9319179_9350871	0/0	t0039	3061	1	1	0	0	0	0	copy fasta	ZNF559	chr19	9319179	9350871
ZNF560_chr19_9461355_9503616	1/1	t0001	443	350	68	61	170	16	33	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	t0002	442	35	12	13	4	0	6	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	t0003	441	17	16	1	0	0	0	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	t0004	443	1	0	0	1	0	0	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	t0005	443	1	1	0	0	0	0	copy fasta	ZNF560	chr19	9461355	9503616
ZNF560_chr19_9461355_9503616	0/0	t0006	443	1	1	0	0	0	0	copy fasta	ZNF560	chr19	9461355	9503616