JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF562_chr19_9636807_9680100	0/0	t0111	11361	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0112	11360	1	0	0	0	1	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0113	11376	1	0	0	0	0	1	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0114	11362	1	0	0	0	0	1	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0115	11361	1	0	0	0	0	1	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0116	11364	1	0	0	0	0	1	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0117	11363	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0118	11362	1	0	1	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0119	11363	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0120	11372	1	0	1	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0121	11374	1	0	0	1	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0122	11373	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0123	11337	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0124	11371	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0125	11375	1	0	0	1	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0126	11374	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0127	11371	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0128	11375	1	0	0	0	0	1	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0129	11377	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0130	11375	1	0	0	1	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0131	11378	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0132	11378	1	0	0	1	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0133	11380	1	0	1	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0134	11380	1	0	0	1	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0135	11381	1	0	0	1	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0136	11383	1	0	0	0	0	1	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0137	11384	1	0	0	0	0	1	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0138	11374	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0139	11343	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0140	11342	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0141	11346	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0142	11345	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0143	11358	1	0	1	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0144	11358	1	0	1	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0145	11358	1	0	1	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0146	11359	1	0	1	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0147	11359	1	0	0	0	1	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0148	11359	1	0	1	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0149	11358	1	0	1	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0150	11362	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0151	11361	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0152	11357	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0153	11357	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0154	11357	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0155	11359	1	0	0	0	0	1	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0156	11361	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0157	11363	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0158	11361	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0159	11362	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0160	11363	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100