JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF562_chr19_9636807_9680100	0/0	t0161	11369	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0162	11370	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0163	11359	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF562_chr19_9636807_9680100	0/0	t0164	11359	1	1	0	0	0	0	copy fasta	ZNF562	chr19	9636807	9680100
ZNF563_chr19_12312477_12338633	1/0	t0001	1269	206	29	49	89	7	31	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	t0002	1281	59	15	4	37	1	2	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	t0003	1268	26	12	3	8	1	2	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/1	t0004	1270	18	2	12	0	3	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	t0005	1282	10	0	0	8	0	2	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	t0006	1280	7	5	0	2	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	t0007	1269	6	6	0	0	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	t0008	1281	6	4	2	0	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	t0009	1268	5	5	0	0	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	t0010	1281	4	0	0	4	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	t0011	1281	3	3	0	0	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	t0012	1281	3	3	0	0	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	t0013	1269	2	0	0	2	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	t0014	1269	2	0	2	0	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	t0015	1269	2	2	0	0	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	t0016	1282	2	2	0	0	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	t0017	1280	1	0	0	1	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	t0018	1269	1	0	1	0	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	t0019	1269	1	0	0	1	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	t0020	1269	1	0	1	0	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	t0021	1269	1	0	0	0	0	1	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	t0022	1281	1	0	0	1	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF563_chr19_12312477_12338633	0/0	t0023	1281	1	0	0	1	0	0	copy fasta	ZNF563	chr19	12312477	12338633
ZNF564_chr19_12520373_12556482	1/1	t0001	1224	379	92	73	162	12	38	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	t0002	1224	11	0	0	11	0	0	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	t0003	1224	4	0	0	0	0	4	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	t0004	1224	4	3	0	0	0	1	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	t0005	1224	2	0	0	2	0	0	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	t0006	1224	2	0	0	2	0	0	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	t0007	1224	1	0	0	1	0	0	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	t0008	1224	1	0	1	0	0	0	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	t0009	1224	1	1	0	0	0	0	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	t0010	1224	1	0	0	0	0	1	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	t0011	1224	1	0	0	1	0	0	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	t0012	1224	1	1	0	0	0	0	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	t0013	1224	1	0	0	1	0	0	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	t0014	1224	1	1	0	0	0	0	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	t0015	1224	1	0	0	1	0	0	copy fasta	ZNF564	chr19	12520373	12556482
ZNF564_chr19_12520373_12556482	0/0	t0016	1074	1	0	0	1	0	0	copy fasta	ZNF564	chr19	12520373	12556482
ZNF565_chr19_36177276_36219665	1/1	t0001	300	346	72	66	160	15	31	copy fasta	ZNF565	chr19	36177276	36219665
ZNF565_chr19_36177276_36219665	0/0	t0002	300	21	16	4	0	0	1	copy fasta	ZNF565	chr19	36177276	36219665
ZNF565_chr19_36177276_36219665	0/0	t0003	300	17	8	3	1	3	2	copy fasta	ZNF565	chr19	36177276	36219665
ZNF565_chr19_36177276_36219665	0/0	t0004	300	1	0	0	1	0	0	copy fasta	ZNF565	chr19	36177276	36219665
ZNF565_chr19_36177276_36219665	0/0	t0005	300	1	0	1	0	0	0	copy fasta	ZNF565	chr19	36177276	36219665
ZNF566_chr19_36440119_36494561	1/0	t0001	3994	111	20	19	51	4	16	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0002	3989	59	8	13	23	2	13	copy fasta	ZNF566	chr19	36440119	36494561