JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF566_chr19_36440119_36494561	0/0	t0003	3993	34	6	3	23	0	2	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/1	t0004	3992	27	5	11	4	1	5	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0005	3994	8	8	0	0	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0006	3995	7	2	3	0	1	1	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0007	3993	7	7	0	0	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0008	3994	5	5	0	0	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0009	3993	4	2	1	0	1	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0010	3994	3	3	0	0	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0011	3993	3	0	2	0	0	1	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0012	3994	3	3	0	0	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0013	3993	3	1	1	1	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0014	3990	3	3	0	0	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0015	3995	2	2	0	0	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0016	3992	2	1	0	1	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0017	3988	2	0	0	2	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0018	3994	2	0	1	0	1	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0019	3992	2	1	1	0	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0020	3993	1	1	0	0	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0021	3989	1	0	0	0	0	1	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0022	3988	1	0	0	1	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0023	3987	1	0	0	1	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0024	3993	1	0	1	0	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0025	3993	1	0	1	0	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0026	3992	1	1	0	0	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0027	3994	1	0	1	0	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0028	3995	1	0	0	1	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0029	3994	1	0	0	0	0	1	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0030	3992	1	0	1	0	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0031	3994	1	0	1	0	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0032	3988	1	1	0	0	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0033	3993	1	1	0	0	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	t0034	3994	1	1	0	0	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF567_chr19_36682612_36726336	0/1	t0001	859	253	53	48	118	9	24	copy fasta	ZNF567	chr19	36682612	36726336
ZNF567_chr19_36682612_36726336	1/0	t0002	859	107	32	21	35	4	14	copy fasta	ZNF567	chr19	36682612	36726336
ZNF567_chr19_36682612_36726336	0/0	t0003	859	19	1	13	0	2	3	copy fasta	ZNF567	chr19	36682612	36726336
ZNF567_chr19_36682612_36726336	0/0	t0004	859	2	0	0	2	0	0	copy fasta	ZNF567	chr19	36682612	36726336
ZNF567_chr19_36682612_36726336	0/0	t0005	832	2	2	0	0	0	0	copy fasta	ZNF567	chr19	36682612	36726336
ZNF567_chr19_36682612_36726336	0/0	t0006	859	1	0	0	0	1	0	copy fasta	ZNF567	chr19	36682612	36726336
ZNF567_chr19_36682612_36726336	0/0	t0007	859	1	0	0	1	0	0	copy fasta	ZNF567	chr19	36682612	36726336
ZNF567_chr19_36682612_36726336	0/0	t0008	859	1	0	0	0	0	1	copy fasta	ZNF567	chr19	36682612	36726336
ZNF568_chr19_36911332_36957734	1/0	t0001	2162	97	19	15	49	1	12	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/1	t0002	2162	56	19	22	4	3	7	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0003	2159	52	14	2	31	1	4	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0004	2163	35	10	8	17	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0005	2160	22	0	5	8	1	8	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0006	2160	9	9	0	0	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0007	2163	8	0	6	0	2	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0008	2161	7	0	4	2	0	1	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0009	2161	6	0	0	3	3	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0010	2160	5	0	0	5	0	0	copy fasta	ZNF568	chr19	36911332	36957734