JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C2orf50_chr2_11128128_11156317	0/0	t0045	7430	1	1	0	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0046	7417	1	0	0	0	1	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0047	7442	1	1	0	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0048	7437	1	0	1	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0049	7438	1	1	0	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0050	7436	1	1	0	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0051	7435	1	1	0	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0052	7431	1	0	0	1	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0053	7434	1	1	0	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0054	7433	1	1	0	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0055	7433	1	1	0	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0056	7434	1	1	0	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0057	7434	1	1	0	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0058	7434	1	1	0	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0059	7434	1	1	0	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0060	7433	1	1	0	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0061	7434	1	1	0	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0062	7415	1	0	0	1	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0063	7418	1	0	0	1	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0064	7427	1	1	0	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0065	7428	1	1	0	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0066	7430	1	1	0	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0067	7415	1	0	0	1	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0068	7414	1	0	0	1	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0069	7414	1	0	0	1	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0070	7414	1	0	0	0	0	1	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0071	7415	1	0	0	1	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0072	7413	1	0	0	1	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0073	7414	1	0	0	1	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0074	7414	1	0	0	1	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0075	7413	1	0	0	1	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0076	7416	1	0	0	1	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0077	7417	1	0	0	1	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0078	7416	1	1	0	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0079	7416	1	0	1	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0080	7416	1	1	0	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0081	7416	1	0	1	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0082	7416	1	0	1	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0083	7416	1	0	0	1	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0084	7418	1	0	0	1	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0085	7415	1	0	1	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0086	7414	1	0	0	0	1	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0087	7415	1	0	0	1	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0088	7414	1	0	0	0	0	1	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0089	7415	1	0	0	1	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0090	7416	1	0	0	1	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0091	7411	1	1	0	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0092	7413	1	0	1	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	t0093	7414	1	0	1	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf66_chr2_196799417_196814355	0/0	t0001	1031	151	4	47	78	5	17	copy fasta	C2orf66	chr2	196799417	196814355