JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF568_chr19_36911332_36957734	0/0	t0011	2161	5	3	2	0	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0012	2158	5	2	1	0	1	1	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0013	2163	5	0	1	2	2	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0014	2160	5	5	0	0	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0015	2162	4	0	0	4	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0016	2163	3	1	2	0	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0017	2162	2	0	0	2	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0018	2162	2	0	2	0	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0019	2162	1	1	0	0	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0020	2157	1	0	0	1	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0021	2158	1	0	0	1	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0022	2159	1	0	0	1	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0023	2159	1	0	0	1	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0024	2163	1	1	0	0	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0025	2161	1	0	1	0	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0026	2162	1	1	0	0	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0027	2164	1	0	0	0	0	1	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0028	2164	1	1	0	0	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0029	2162	1	0	1	0	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0030	2161	1	0	0	1	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0031	2162	1	0	0	1	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0032	2162	1	1	0	0	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0033	2164	1	0	0	0	0	1	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0034	2162	1	0	0	1	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0035	2158	1	1	0	0	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	t0036	2160	1	0	0	0	0	1	copy fasta	ZNF568	chr19	36911332	36957734
ZNF569_chr19_37406157_37472444	1/1	t0001	2006	239	51	49	108	9	20	copy fasta	ZNF569	chr19	37406157	37472444
ZNF569_chr19_37406157_37472444	0/0	t0002	2007	90	18	9	52	1	10	copy fasta	ZNF569	chr19	37406157	37472444
ZNF569_chr19_37406157_37472444	0/0	t0003	2006	21	1	6	12	1	1	copy fasta	ZNF569	chr19	37406157	37472444
ZNF569_chr19_37406157_37472444	0/0	t0004	2007	11	8	0	1	1	1	copy fasta	ZNF569	chr19	37406157	37472444
ZNF569_chr19_37406157_37472444	0/0	t0005	2006	4	0	1	0	0	3	copy fasta	ZNF569	chr19	37406157	37472444
ZNF569_chr19_37406157_37472444	0/0	t0006	2007	2	2	0	0	0	0	copy fasta	ZNF569	chr19	37406157	37472444
ZNF569_chr19_37406157_37472444	0/0	t0007	2007	2	2	0	0	0	0	copy fasta	ZNF569	chr19	37406157	37472444
ZNF569_chr19_37406157_37472444	0/0	t0008	2007	1	0	0	1	0	0	copy fasta	ZNF569	chr19	37406157	37472444
ZNF569_chr19_37406157_37472444	0/0	t0009	2006	1	0	1	0	0	0	copy fasta	ZNF569	chr19	37406157	37472444
ZNF569_chr19_37406157_37472444	0/0	t0010	2006	1	0	0	0	0	1	copy fasta	ZNF569	chr19	37406157	37472444
ZNF569_chr19_37406157_37472444	0/0	t0011	2006	1	1	0	0	0	0	copy fasta	ZNF569	chr19	37406157	37472444
ZNF569_chr19_37406157_37472444	0/0	t0012	2006	1	1	0	0	0	0	copy fasta	ZNF569	chr19	37406157	37472444
ZNF570_chr19_37464356_37493652	1/1	t0001	3673	85	6	14	49	7	7	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0002	3674	80	18	8	42	1	11	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0003	3672	45	17	10	15	1	2	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0004	3673	39	7	9	12	3	8	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0005	3674	17	2	2	7	0	6	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0006	3674	12	1	4	5	0	2	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0007	3675	12	4	2	5	0	1	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0008	3673	12	0	6	5	0	1	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0009	3673	8	0	0	8	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0010	3674	7	7	0	0	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0011	3672	7	0	0	7	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0012	3674	7	7	0	0	0	0	copy fasta	ZNF570	chr19	37464356	37493652