JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF570_chr19_37464356_37493652	0/0	t0013	3673	3	0	0	0	0	3	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0014	3673	3	0	2	0	1	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0015	3673	3	0	0	3	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0016	3672	3	0	1	2	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0017	3673	3	3	0	0	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0018	3673	2	2	0	0	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0019	3672	2	1	1	0	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0020	3671	2	2	0	0	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0021	3677	2	2	0	0	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0022	3675	2	0	0	2	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0023	3673	1	1	0	0	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0024	3674	1	1	0	0	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0025	3671	1	1	0	0	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0026	3674	1	0	1	0	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0027	3672	1	1	0	0	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0028	3673	1	0	0	1	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0029	3672	1	0	0	1	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0030	3672	1	0	1	0	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0031	3673	1	0	0	1	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0032	3674	1	0	1	0	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0033	3673	1	0	0	1	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0034	3675	1	0	1	0	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0035	3673	1	1	0	0	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0036	3674	1	0	0	0	0	1	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0037	3676	1	0	0	1	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0038	3674	1	0	0	0	0	1	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0039	3674	1	0	1	0	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0040	3674	1	0	0	1	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0041	3676	1	0	0	1	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0042	3674	1	1	0	0	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0043	3676	1	0	0	1	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0044	3674	1	0	0	0	0	1	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0045	3673	1	0	0	0	1	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	t0046	3675	1	1	0	0	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF571_chr19_37559260_37599792	1/1	t0001	460	332	75	71	142	12	30	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	t0002	460	4	4	0	0	0	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	t0003	460	4	4	0	0	0	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	t0004	460	2	1	1	0	0	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF572_chr8_124968295_124984389	1/0	t0001	1689	349	67	57	177	10	37	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	t0002	1689	11	10	1	0	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	t0003	1689	11	9	2	0	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/1	t0004	1689	8	5	2	0	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	t0005	1689	2	0	0	2	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	t0006	1689	1	0	0	1	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	t0007	1689	1	1	0	0	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	t0008	1689	1	1	0	0	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	t0009	1689	1	1	0	0	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	t0010	1689	1	0	0	1	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	t0011	1689	1	0	0	1	0	0	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	t0012	1689	1	0	0	0	0	1	copy fasta	ZNF572	chr8	124968295	124984389