JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
ZNF578_chr19_52448553_52521882	0/0	t0025	4986	3	0	0	3	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0026	4996	3	1	0	1	1	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0027	4985	2	1	1	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0028	4998	2	2	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0029	4999	2	2	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0030	4998	2	0	2	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0031	4985	2	0	0	2	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0032	5000	2	2	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0033	4986	2	0	2	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0034	4985	1	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0035	4996	1	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0036	4996	1	0	0	0	1	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0037	4997	1	0	0	1	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0038	4998	1	0	1	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0039	4998	1	0	1	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0040	4987	1	0	0	1	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0041	4986	1	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0042	4986	1	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0043	4987	1	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0044	4985	1	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0045	4984	1	0	0	1	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0046	4976	1	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0047	4996	1	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0048	4996	1	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0049	4997	1	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0050	4998	1	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0051	5000	1	0	1	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0052	4998	1	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0053	5000	1	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0054	5001	1	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0055	4986	1	0	0	1	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0056	4990	1	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0057	4991	1	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0058	4985	1	0	0	1	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0059	4986	1	0	0	1	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0060	4987	1	0	0	0	1	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0061	4996	1	0	0	1	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0062	4996	1	0	0	0	1	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0063	4995	1	0	0	1	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0064	4996	1	0	1	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0065	4996	1	0	0	1	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0066	4999	1	0	0	1	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0067	4998	1	0	0	1	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0068	4995	1	0	0	0	1	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0069	4995	1	0	0	1	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0070	4997	1	0	1	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0071	4985	1	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0072	4985	1	0	0	1	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0073	4986	1	0	0	1	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	t0074	4986	1	0	0	1	0	copy fasta	ZNF578	chr19	52448553	52521882