JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF584_chr19_58403649_58423327	0/1	t0002	1034	71	9	11	40	4	6	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	1/0	t0003	1043	61	7	17	29	3	4	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	t0004	1043	43	10	14	8	2	9	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	t0005	1043	36	31	2	3	0	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	t0006	1034	11	8	3	0	0	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	t0007	1043	6	4	2	0	0	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	t0008	1043	5	4	1	0	0	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	t0009	1043	3	3	0	0	0	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	t0010	1043	2	2	0	0	0	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	t0011	1043	2	0	0	2	0	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	t0012	1043	2	1	1	0	0	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	t0013	1043	1	0	0	1	0	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	t0014	1034	1	0	0	0	1	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	t0015	1034	1	0	0	0	0	1	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	t0016	1034	1	0	0	1	0	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	t0017	1034	1	0	0	0	1	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	t0018	1043	1	0	0	1	0	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF584_chr19_58403649_58423327	0/0	t0019	1043	1	1	0	0	0	0	copy fasta	ZNF584	chr19	58403649	58423327
ZNF585A_chr19_37140540_37177695	1/0	t0001	6263	138	13	27	75	9	13	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0002	6259	41	17	3	11	1	9	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/1	t0003	6261	36	5	15	1	7	7	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0004	6259	21	0	7	14	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0005	6269	9	0	5	3	0	1	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0006	6260	8	8	0	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0007	6258	7	7	0	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0008	6261	7	7	0	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0009	6259	7	4	3	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0010	6262	6	0	0	6	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0011	6261	4	4	0	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0012	6262	4	3	1	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0013	6259	3	0	0	3	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0014	6263	3	3	0	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0015	6259	3	3	0	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0016	6265	3	0	0	3	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0017	6258	2	2	0	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0018	6265	2	2	0	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0019	6261	2	0	2	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0020	6263	2	0	0	2	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0021	6263	2	0	2	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0022	6263	2	0	0	0	0	2	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0023	6263	2	0	0	2	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0024	6261	2	0	0	0	1	1	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0025	6260	1	1	0	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0026	6259	1	1	0	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0027	6261	1	1	0	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0028	6261	1	1	0	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0029	6261	1	0	0	1	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0030	6259	1	0	0	0	0	1	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0031	6261	1	1	0	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	t0032	6260	1	1	0	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695