JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C2orf66_chr2_196799417_196814355	1/1	t0002	1031	140	76	22	21	3	16	copy fasta	C2orf66	chr2	196799417	196814355
C2orf66_chr2_196799417_196814355	0/0	t0003	1031	5	5	0	0	0	0	copy fasta	C2orf66	chr2	196799417	196814355
C2orf66_chr2_196799417_196814355	0/0	t0004	1031	3	3	0	0	0	0	copy fasta	C2orf66	chr2	196799417	196814355
C2orf66_chr2_196799417_196814355	0/0	t0005	1031	2	0	2	0	0	0	copy fasta	C2orf66	chr2	196799417	196814355
C2orf66_chr2_196799417_196814355	0/0	t0006	1031	1	1	0	0	0	0	copy fasta	C2orf66	chr2	196799417	196814355
C2orf66_chr2_196799417_196814355	0/0	t0007	1031	1	0	1	0	0	0	copy fasta	C2orf66	chr2	196799417	196814355
C2orf66_chr2_196799417_196814355	0/0	t0008	1031	1	1	0	0	0	0	copy fasta	C2orf66	chr2	196799417	196814355
C2orf66_chr2_196799417_196814355	0/0	t0009	1031	1	0	0	1	0	0	copy fasta	C2orf66	chr2	196799417	196814355
C2orf66_chr2_196799417_196814355	0/0	t0010	1031	1	0	0	0	0	1	copy fasta	C2orf66	chr2	196799417	196814355
C2orf68_chr2_85600254_85617066	0/0	t0001	3773	93	8	27	48	3	7	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0002	3770	76	21	1	50	1	3	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	1/0	t0003	3774	55	2	13	28	2	9	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0004	3772	24	3	4	13	0	4	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0005	3774	18	3	5	2	3	5	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0006	3771	14	14	0	0	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0007	3772	12	6	2	4	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0008	3769	10	1	2	7	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0009	3773	10	3	3	0	0	4	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0010	3774	7	3	4	0	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/1	t0011	3775	7	0	2	4	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0012	3774	5	0	5	0	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0013	3771	4	0	0	3	0	1	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0014	3772	4	4	0	0	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0015	3770	3	2	1	0	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0016	3770	2	2	0	0	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0017	3772	2	2	0	0	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0018	3771	2	2	0	0	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0019	3773	2	0	2	0	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0020	3773	2	1	0	0	1	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0021	3772	1	0	0	1	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0022	3773	1	0	0	1	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0023	3769	1	1	0	0	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0024	3770	1	1	0	0	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0025	3800	1	0	0	1	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0026	3771	1	1	0	0	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0027	3771	1	1	0	0	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0028	3772	1	0	0	0	0	1	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0029	3773	1	0	0	1	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0030	3773	1	1	0	0	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0031	3773	1	0	0	1	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0032	3773	1	0	0	1	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0033	3773	1	0	0	1	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0034	3773	1	0	0	0	0	1	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0035	3773	1	0	0	1	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0036	3774	1	0	0	0	0	1	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0037	3774	1	0	1	0	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0038	3774	1	0	0	1	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0039	3774	1	1	0	0	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0040	3774	1	1	0	0	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0041	3775	1	1	0	0	0	0	copy fasta	C2orf68	chr2	85600254	85617066