JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
ZNF585B_chr19_37176579_37215536	0/0	t0031	3892	3	2	0	1	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0032	3843	3	3	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0033	3855	3	0	3	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0034	3843	2	2	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0035	3840	2	0	1	0	1	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0036	3856	2	2	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0037	3860	2	0	2	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0038	3872	2	0	0	2	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0039	3888	2	0	1	1	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0040	3896	2	0	0	2	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0041	3842	2	1	0	1	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0042	3900	2	0	0	1	1	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0043	3880	2	0	0	0	2	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0044	3870	2	0	2	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	1/0	t0045	3888	2	0	0	0	1	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0046	3892	2	0	2	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0047	3912	2	0	2	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0048	3888	2	0	0	0	2	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0049	3862	2	2	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0050	3907	2	0	0	2	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0051	3908	2	0	0	1	1	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0052	3916	2	0	0	2	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0053	3870	2	0	0	0	2	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0054	3866	2	0	0	0	2	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0055	3839	2	0	0	2	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0056	3847	2	0	1	1	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0057	3846	2	2	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0058	3850	2	2	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0059	3856	1	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0060	3864	1	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0061	3874	1	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0062	3872	1	0	0	1	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0063	3858	1	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0064	3844	1	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0065	3868	1	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0066	3864	1	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0067	3852	1	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0068	3848	1	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0069	3904	1	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0070	3864	1	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0071	3900	1	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0072	3868	1	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0073	3856	1	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0074	3852	1	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0075	3859	1	0	0	1	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0076	3908	1	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0077	3904	1	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0078	3872	1	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0079	3894	1	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0080	3872	1	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536