JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF585B_chr19_37176579_37215536	0/0	t0081	3859	1	0	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0082	3860	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0083	3860	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0084	3863	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0085	3874	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0086	3872	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0087	3864	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0088	3898	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0089	3886	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0090	3868	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0091	3868	1	0	0	0	0	1	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0092	3872	1	0	0	0	0	1	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0093	3886	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0094	3853	1	0	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0095	3854	1	0	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0096	3870	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0097	3869	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0098	3870	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0099	3880	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0100	3860	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0101	3864	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0102	3882	1	0	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0103	3890	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0104	3894	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0105	3892	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0106	3888	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0107	3884	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0108	3886	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0109	3896	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0110	3872	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0111	3888	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0112	3890	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0113	3895	1	0	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0114	3896	1	0	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0115	3884	1	0	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0116	3900	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0117	3892	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0118	3892	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0119	3896	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0120	3891	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0121	3888	1	0	0	0	0	1	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0122	3876	1	0	0	0	0	1	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0123	3908	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0124	3896	1	0	0	0	1	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0125	3892	1	0	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0126	3904	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0127	3912	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0128	3908	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0129	3896	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0130	3887	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536