JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF585B_chr19_37176579_37215536	0/0	t0131	3888	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0132	3887	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0133	3894	1	0	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0134	3896	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0135	3912	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0136	3908	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0137	3850	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0138	3846	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0139	3908	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0140	3900	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0141	3891	1	0	0	0	0	1	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0142	3884	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0143	3886	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0144	3907	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0145	3903	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0146	3899	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0147	3902	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0148	3916	1	0	0	0	1	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0149	3904	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0150	3900	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0151	3888	1	0	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0152	3884	1	0	0	0	0	1	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0153	3902	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0154	3854	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0155	3912	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0156	3906	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0157	3899	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0158	3900	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0159	3901	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0160	3882	1	0	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0161	3891	1	0	0	0	0	1	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0162	3888	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0163	3908	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0164	3903	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0165	3896	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0166	3846	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0167	3912	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0168	3907	1	0	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0169	3908	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0170	3903	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0171	3900	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0172	3892	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0173	3860	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0174	3920	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0175	3862	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0176	3858	1	0	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0177	3858	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0178	3911	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0179	3912	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0180	3903	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536