JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF585B_chr19_37176579_37215536	0/0	t0181	3904	1	0	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0182	3899	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0183	3900	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0184	3896	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0185	3861	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0186	3920	1	0	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0187	3862	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0188	3907	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0189	3922	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0190	3866	1	0	0	0	0	1	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0191	3881	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0192	3916	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0193	3906	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0194	3884	1	0	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0195	3908	1	0	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0196	3843	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0197	3855	1	0	0	0	0	1	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0198	3847	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0199	3855	1	0	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0200	3854	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0201	3850	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0202	3845	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0203	3858	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0204	3854	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0205	3892	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0206	3900	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	t0207	3884	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF586_chr19_57764676_57785616	0/1	t0001	989	125	11	31	62	9	11	copy fasta	ZNF586	chr19	57764676	57785616
ZNF586_chr19_57764676_57785616	1/0	t0002	988	82	4	28	30	2	17	copy fasta	ZNF586	chr19	57764676	57785616
ZNF586_chr19_57764676_57785616	0/0	t0003	988	68	49	7	11	1	0	copy fasta	ZNF586	chr19	57764676	57785616
ZNF586_chr19_57764676_57785616	0/0	t0004	988	57	11	8	27	3	8	copy fasta	ZNF586	chr19	57764676	57785616
ZNF586_chr19_57764676_57785616	0/0	t0005	988	22	0	0	22	0	0	copy fasta	ZNF586	chr19	57764676	57785616
ZNF586_chr19_57764676_57785616	0/0	t0006	990	17	3	3	9	0	2	copy fasta	ZNF586	chr19	57764676	57785616
ZNF586_chr19_57764676_57785616	0/0	t0007	989	12	0	3	7	1	1	copy fasta	ZNF586	chr19	57764676	57785616
ZNF586_chr19_57764676_57785616	0/0	t0008	988	7	7	0	0	0	0	copy fasta	ZNF586	chr19	57764676	57785616
ZNF586_chr19_57764676_57785616	0/0	t0009	988	5	4	0	1	0	0	copy fasta	ZNF586	chr19	57764676	57785616
ZNF586_chr19_57764676_57785616	0/0	t0010	989	4	0	0	4	0	0	copy fasta	ZNF586	chr19	57764676	57785616
ZNF586_chr19_57764676_57785616	0/0	t0011	989	4	0	1	1	0	2	copy fasta	ZNF586	chr19	57764676	57785616
ZNF586_chr19_57764676_57785616	0/0	t0012	988	3	0	0	0	0	3	copy fasta	ZNF586	chr19	57764676	57785616
ZNF586_chr19_57764676_57785616	0/0	t0013	989	2	2	0	0	0	0	copy fasta	ZNF586	chr19	57764676	57785616
ZNF586_chr19_57764676_57785616	0/0	t0014	168	1	0	1	0	0	0	copy fasta	ZNF586	chr19	57764676	57785616
ZNF586_chr19_57764676_57785616	0/0	t0015	988	1	1	0	0	0	0	copy fasta	ZNF586	chr19	57764676	57785616
ZNF587B_chr19_57825299_57851238	0/1	t0001	3893	122	13	29	67	5	7	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	1/0	t0002	3893	107	18	17	52	4	15	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0003	3894	14	0	1	11	0	2	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0004	3900	11	2	0	5	0	4	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0005	3894	10	2	1	5	0	2	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0006	3899	9	0	1	7	0	1	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0007	3882	8	0	0	8	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0008	3882	8	8	0	0	0	0	copy fasta	ZNF587B	chr19	57825299	57851238