JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF587B_chr19_57825299_57851238	0/0	t0059	3870	1	1	0	0	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0060	3872	1	1	0	0	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0061	3874	1	1	0	0	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0062	3879	1	1	0	0	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0063	3880	1	1	0	0	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0064	3893	1	0	0	1	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0065	3902	1	0	1	0	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0066	3893	1	0	0	1	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0067	3904	1	0	0	1	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0068	3911	1	0	0	1	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0069	3912	1	0	0	1	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0070	3893	1	0	0	0	0	1	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0071	3893	1	1	0	0	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0072	3915	1	0	0	0	0	1	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0073	3882	1	0	0	1	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0074	3883	1	0	0	1	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0075	3900	1	0	0	0	1	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0076	3902	1	1	0	0	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0077	3903	1	1	0	0	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0078	3903	1	0	0	0	0	1	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0079	3904	1	0	0	0	0	1	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0080	3923	1	0	0	0	1	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0081	3926	1	0	1	0	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0082	3930	1	0	1	0	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0083	3902	1	1	0	0	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0084	3893	1	0	0	1	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0085	3893	1	1	0	0	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0086	3893	1	0	1	0	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	t0087	3893	1	0	0	0	0	1	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587_chr19_57844859_57870117	0/0	t0001	5156	63	1	23	24	3	12	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0002	5161	46	0	7	38	0	1	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	1/0	t0003	5158	36	1	5	21	2	6	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0004	5161	25	2	11	10	2	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0005	5168	12	0	1	9	0	2	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0006	5161	10	0	0	10	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0007	5161	9	9	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0008	5154	6	5	1	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0009	5158	6	0	0	6	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0010	5159	6	0	0	5	0	1	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0011	5164	5	0	3	0	2	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0012	5158	5	5	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0013	5161	4	0	0	4	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0014	5162	4	0	0	4	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0015	5168	4	4	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0016	5157	4	4	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0017	5158	4	4	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0018	5159	4	1	2	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0019	5158	4	3	1	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0020	5156	4	4	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0021	5159	3	1	0	2	0	0	copy fasta	ZNF587	chr19	57844859	57870117