JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF587_chr19_57844859_57870117	0/0	t0022	5168	3	0	2	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0023	5168	3	1	2	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0024	5169	3	0	0	0	1	2	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0025	5169	3	0	1	2	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0026	5161	3	0	0	3	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0027	5165	3	0	1	1	1	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0028	5157	3	3	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0029	5156	3	0	0	3	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0030	5158	3	0	0	3	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0031	5155	3	3	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0032	5160	3	3	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0033	5157	2	2	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0034	5173	2	2	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0035	5180	2	2	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0036	5168	2	0	0	0	1	1	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0037	5167	2	0	1	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0038	5169	2	0	0	2	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/1	t0039	5168	2	0	1	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0040	5169	2	0	2	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0041	5160	2	0	0	2	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0042	5162	2	0	0	1	0	1	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0043	5168	2	1	1	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0044	5158	2	0	2	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0045	5156	2	0	0	2	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0046	5159	2	0	0	2	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0047	5157	2	0	0	2	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0048	5157	2	0	1	0	0	1	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0049	5158	2	0	1	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0050	5156	2	0	0	1	0	1	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0051	5152	2	0	0	2	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0052	5153	2	0	0	2	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0053	5158	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0054	5165	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0055	5166	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0056	5157	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0057	5157	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0058	5158	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0059	5170	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0060	5172	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0061	5171	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0062	5172	1	0	1	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0063	5172	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0064	5170	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0065	5180	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0066	5160	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0067	5160	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0068	5160	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0069	5152	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0070	5157	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0071	5163	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117