JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF587_chr19_57844859_57870117	0/0	t0072	5167	1	0	1	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0073	5168	1	0	0	0	0	1	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0074	5161	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0075	5168	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0076	5167	1	0	1	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0077	5164	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0078	5160	1	0	1	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0079	5161	1	0	0	0	1	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0080	5161	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0081	5161	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0082	5161	1	0	0	0	0	1	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0083	5166	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0084	5161	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0085	5162	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0086	5161	1	0	1	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0087	5165	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0088	5162	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0089	5166	1	0	0	0	0	1	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0090	5161	1	0	0	0	0	1	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0091	5162	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0092	5167	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0093	5167	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0094	5168	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0095	5161	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0096	5163	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0097	5163	1	0	0	0	0	1	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0098	5161	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0099	5161	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0100	5162	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0101	5163	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0102	5180	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0103	5166	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0104	5178	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0105	5179	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0106	5179	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0107	5180	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0108	5180	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0109	5180	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0110	5175	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0111	5173	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0112	5175	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0113	5166	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0114	5170	1	0	1	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0115	5170	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0116	5172	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0117	5180	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0118	5181	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0119	5174	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0120	5156	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0121	5180	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117