JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF587_chr19_57844859_57870117	0/0	t0122	5169	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0123	5164	1	0	1	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0124	5164	1	0	0	0	0	1	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0125	5164	1	0	1	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0126	5164	1	0	0	0	1	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0127	5160	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0128	5158	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0129	5156	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0130	5157	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0131	5155	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0132	5156	1	0	0	0	0	1	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0133	5156	1	0	0	0	0	1	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0134	5153	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0135	5156	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0136	5156	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0137	5156	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0138	5156	1	0	1	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0139	5158	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0140	5158	1	0	0	0	0	1	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0141	5152	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0142	5156	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0143	5158	1	0	1	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0144	5158	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0145	5159	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0146	5160	1	0	1	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0147	5159	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0148	5152	1	0	0	0	1	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0149	5157	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0150	5158	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0151	5158	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0152	5159	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0153	5156	1	0	1	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0154	5023	1	0	0	0	0	1	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0155	5158	1	0	0	0	0	1	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0156	5156	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0157	5156	1	0	1	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0158	5161	1	0	0	0	0	1	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0159	5156	1	0	0	0	1	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0160	5157	1	0	0	0	0	1	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0161	5156	1	0	1	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0162	5158	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0163	5173	1	0	1	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0164	5159	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0165	5158	1	0	0	0	0	1	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0166	5157	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0167	5157	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0168	5158	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	t0169	5157	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF589_chr3_48236104_48275990	1/0	t0001	2273	153	32	33	63	7	17	copy fasta	ZNF589	chr3	48236104	48275990
ZNF589_chr3_48236104_48275990	0/1	t0002	2269	61	8	16	26	2	8	copy fasta	ZNF589	chr3	48236104	48275990