JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF589_chr3_48236104_48275990	0/0	t0003	2273	52	19	9	19	1	4	copy fasta	ZNF589	chr3	48236104	48275990
ZNF589_chr3_48236104_48275990	0/0	t0004	2268	14	0	3	11	0	0	copy fasta	ZNF589	chr3	48236104	48275990
ZNF589_chr3_48236104_48275990	0/0	t0005	2269	10	10	0	0	0	0	copy fasta	ZNF589	chr3	48236104	48275990
ZNF589_chr3_48236104_48275990	0/0	t0006	2269	2	2	0	0	0	0	copy fasta	ZNF589	chr3	48236104	48275990
ZNF589_chr3_48236104_48275990	0/0	t0007	2273	2	2	0	0	0	0	copy fasta	ZNF589	chr3	48236104	48275990
ZNF589_chr3_48236104_48275990	0/0	t0008	2269	1	0	0	1	0	0	copy fasta	ZNF589	chr3	48236104	48275990
ZNF589_chr3_48236104_48275990	0/0	t0009	2269	1	0	0	1	0	0	copy fasta	ZNF589	chr3	48236104	48275990
ZNF589_chr3_48236104_48275990	0/0	t0010	2269	1	0	1	0	0	0	copy fasta	ZNF589	chr3	48236104	48275990
ZNF589_chr3_48236104_48275990	0/0	t0011	2269	1	1	0	0	0	0	copy fasta	ZNF589	chr3	48236104	48275990
ZNF589_chr3_48236104_48275990	0/0	t0012	2273	1	0	1	0	0	0	copy fasta	ZNF589	chr3	48236104	48275990
ZNF589_chr3_48236104_48275990	0/0	t0013	2273	1	0	0	0	0	1	copy fasta	ZNF589	chr3	48236104	48275990
ZNF589_chr3_48236104_48275990	0/0	t0014	2273	1	0	1	0	0	0	copy fasta	ZNF589	chr3	48236104	48275990
ZNF589_chr3_48236104_48275990	0/0	t0015	2273	1	1	0	0	0	0	copy fasta	ZNF589	chr3	48236104	48275990
ZNF589_chr3_48236104_48275990	0/0	t0016	1853	1	1	0	0	0	0	copy fasta	ZNF589	chr3	48236104	48275990
ZNF589_chr3_48236104_48275990	0/0	t0017	2273	1	0	0	1	0	0	copy fasta	ZNF589	chr3	48236104	48275990
ZNF592_chr15_84743592_84811445	0/1	t0001	4384	226	50	25	123	12	15	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0002	4380	43	1	15	21	1	5	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	1/0	t0003	4384	35	2	14	4	3	11	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0004	4384	11	10	1	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0005	4384	6	3	1	2	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0006	4384	6	6	0	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0007	4384	5	0	0	5	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0008	4384	5	5	0	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0009	4385	4	3	1	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0010	4384	4	3	1	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0011	4384	3	2	1	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0012	4384	2	2	0	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0013	4384	2	2	0	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0014	4384	2	0	2	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0015	4385	1	1	0	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0016	4385	1	1	0	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0017	4380	1	0	1	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0018	4384	1	0	0	0	0	1	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0019	4384	1	0	1	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0020	4384	1	1	0	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0021	4384	1	0	0	1	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0022	4384	1	0	0	1	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0023	4384	1	0	0	1	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0024	4384	1	0	1	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0025	4384	1	1	0	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0026	4384	1	0	0	1	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0027	4384	1	0	0	1	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0028	4384	1	0	0	1	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0029	4384	1	1	0	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	t0030	4384	1	0	0	1	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF593OS_chr1_26164521_26176832	0/0	t0001	1203	141	25	29	73	0	14	copy fasta	ZNF593OS	chr1	26164521	26176832
ZNF593OS_chr1_26164521_26176832	0/0	t0002	1203	88	6	21	48	6	7	copy fasta	ZNF593OS	chr1	26164521	26176832
ZNF593OS_chr1_26164521_26176832	0/1	t0003	1203	44	5	13	11	5	9	copy fasta	ZNF593OS	chr1	26164521	26176832
ZNF593OS_chr1_26164521_26176832	0/0	t0004	1203	28	8	4	4	1	11	copy fasta	ZNF593OS	chr1	26164521	26176832
ZNF593OS_chr1_26164521_26176832	1/0	t0005	1203	25	19	5	0	0	0	copy fasta	ZNF593OS	chr1	26164521	26176832