JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C2orf68_chr2_85600254_85617066	0/0	t0042	3775	1	0	0	1	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0043	3786	1	0	0	1	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	t0044	3773	1	1	0	0	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf69_chr2_199906293_199933273	0/0	t0001	2537	103	24	18	39	7	15	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0002	2534	86	16	12	48	1	9	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0003	2533	55	1	20	31	1	2	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	1/0	t0004	2534	50	9	5	33	0	2	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/1	t0005	2536	41	6	3	29	0	2	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0006	2533	18	13	2	3	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0007	2532	14	0	1	11	0	2	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0008	2535	8	0	2	5	1	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0009	2535	6	1	1	4	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0010	2532	4	1	2	0	0	1	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0011	2534	3	0	0	3	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0012	2536	3	1	1	1	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0013	2537	2	0	0	2	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0014	2533	2	0	1	0	0	1	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0015	2533	2	0	0	2	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0016	2537	1	0	1	0	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0017	2533	1	0	0	1	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0018	2534	1	0	0	1	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0019	2535	1	1	0	0	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0020	2534	1	1	0	0	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0021	2533	1	0	0	1	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0022	2535	1	1	0	0	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0023	2534	1	0	1	0	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0024	2533	1	0	1	0	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0025	2534	1	1	0	0	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0026	2532	1	1	0	0	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0027	2534	1	0	0	1	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0028	2537	1	0	1	0	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0029	2536	1	0	0	1	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	t0030	2534	1	1	0	0	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf72_chr2_231032523_231054719	1/1	t0001	2742	247	21	46	130	10	38	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0002	2742	65	17	5	40	1	2	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0003	2742	50	25	11	6	4	4	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0004	2742	44	3	4	35	1	1	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0005	2742	10	10	0	0	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0006	2742	6	6	0	0	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0007	2742	5	0	4	0	0	1	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0008	2742	2	1	0	0	0	1	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0009	2742	2	2	0	0	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0010	2742	2	2	0	0	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0011	2742	2	2	0	0	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0012	2742	2	2	0	0	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0013	2742	2	0	2	0	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0014	2742	2	0	0	2	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0015	2742	1	0	0	1	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0016	2742	1	1	0	0	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	t0017	2742	1	1	0	0	0	0	copy fasta	C2orf72	chr2	231032523	231054719