JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF593OS_chr1_26164521_26176832	0/0	t0006	1203	24	20	4	0	0	0	copy fasta	ZNF593OS	chr1	26164521	26176832
ZNF593OS_chr1_26164521_26176832	0/0	t0007	1203	4	4	0	0	0	0	copy fasta	ZNF593OS	chr1	26164521	26176832
ZNF593OS_chr1_26164521_26176832	0/0	t0008	1201	3	2	1	0	0	0	copy fasta	ZNF593OS	chr1	26164521	26176832
ZNF593OS_chr1_26164521_26176832	0/0	t0009	1203	2	0	0	0	2	0	copy fasta	ZNF593OS	chr1	26164521	26176832
ZNF593OS_chr1_26164521_26176832	0/0	t0010	1203	2	0	0	2	0	0	copy fasta	ZNF593OS	chr1	26164521	26176832
ZNF593OS_chr1_26164521_26176832	0/0	t0011	1203	1	0	0	0	0	1	copy fasta	ZNF593OS	chr1	26164521	26176832
ZNF593OS_chr1_26164521_26176832	0/0	t0012	1203	1	0	1	0	0	0	copy fasta	ZNF593OS	chr1	26164521	26176832
ZNF593OS_chr1_26164521_26176832	0/0	t0013	1203	1	1	0	0	0	0	copy fasta	ZNF593OS	chr1	26164521	26176832
ZNF593OS_chr1_26164521_26176832	0/0	t0014	1203	1	1	0	0	0	0	copy fasta	ZNF593OS	chr1	26164521	26176832
ZNF593OS_chr1_26164521_26176832	0/0	t0015	1203	1	1	0	0	0	0	copy fasta	ZNF593OS	chr1	26164521	26176832
ZNF593_chr1_26164908_26175873	0/0	t0001	234	232	60	42	98	3	29	copy fasta	ZNF593	chr1	26164908	26175873
ZNF593_chr1_26164908_26175873	0/0	t0002	234	90	6	21	50	6	7	copy fasta	ZNF593	chr1	26164908	26175873
ZNF593_chr1_26164908_26175873	1/1	t0003	234	52	24	15	0	5	6	copy fasta	ZNF593	chr1	26164908	26175873
ZNF593_chr1_26164908_26175873	0/0	t0004	234	1	1	0	0	0	0	copy fasta	ZNF593	chr1	26164908	26175873
ZNF593_chr1_26164908_26175873	0/0	t0005	234	1	1	0	0	0	0	copy fasta	ZNF593	chr1	26164908	26175873
ZNF594_chr17_5174535_5196868	0/0	t0001	2440	216	36	22	135	3	20	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/1	t0002	2440	105	17	37	25	9	16	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0003	2440	40	5	7	22	1	5	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0004	2440	10	9	1	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0005	2440	5	0	0	5	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0006	2440	5	5	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0007	2440	3	3	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	1/0	t0008	2440	2	1	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0009	2440	2	2	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0010	2440	2	2	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0011	2440	2	2	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0012	2440	2	1	0	1	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0013	2440	2	2	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0014	2440	2	0	2	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0015	2440	2	2	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0016	2440	2	0	2	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0017	2440	1	0	1	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0018	2440	1	0	0	1	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0019	2440	1	0	0	0	1	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0020	2424	1	0	1	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0021	2440	1	0	0	1	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0022	2440	1	1	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0023	2440	1	1	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0024	2440	1	0	1	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0025	2440	1	0	0	1	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0026	2440	1	0	0	1	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0027	2440	1	1	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0028	2440	1	0	0	0	0	1	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0029	2440	1	0	0	1	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	t0030	2440	1	0	0	1	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF595_chr4_48321_93208	0/1	t0001	926	158	32	30	74	6	15	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	t0002	926	44	2	10	24	2	6	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	t0003	925	16	3	10	2	0	1	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	t0004	929	15	3	2	6	0	4	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	t0005	925	15	10	1	1	0	3	copy fasta	ZNF595	chr4	48321	93208