JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF595_chr4_48321_93208	0/0	t0006	927	14	0	8	2	1	3	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	t0007	924	7	0	3	0	0	4	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	t0008	925	7	6	1	0	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	t0009	925	6	6	0	0	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	t0010	927	5	1	1	3	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	t0011	926	4	4	0	0	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	t0012	924	3	3	0	0	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	t0013	926	2	2	0	0	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	t0014	924	2	2	0	0	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	t0015	926	1	1	0	0	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	t0016	925	1	1	0	0	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	1/0	t0017	926	1	0	0	0	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	t0018	926	1	0	1	0	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	t0019	926	1	0	0	0	1	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	t0020	926	1	0	1	0	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	t0021	925	1	1	0	0	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	t0022	926	1	1	0	0	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	t0023	927	1	0	0	0	0	1	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	t0024	926	1	0	0	0	0	1	copy fasta	ZNF595	chr4	48321	93208
ZNF596_chr8_227456_252339	1/0	t0001	1289	176	26	45	71	12	21	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/1	t0002	1289	157	7	27	99	3	20	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	t0003	1289	59	36	2	20	0	1	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	t0004	1289	9	0	4	0	1	4	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	t0005	1289	9	2	1	6	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	t0006	1289	6	5	1	0	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	t0007	1289	6	6	0	0	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	t0008	1289	5	4	1	0	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	t0009	1289	3	2	1	0	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	t0010	1289	3	0	0	3	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	t0011	1289	2	2	0	0	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	t0012	1289	1	0	0	1	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	t0013	1289	1	1	0	0	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	t0014	1289	1	0	0	0	0	1	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	t0015	1289	1	0	0	0	0	1	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	t0016	1289	1	0	0	1	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	t0017	1289	1	0	0	1	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	t0018	1289	1	1	0	0	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	t0019	1289	1	1	0	0	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	t0020	1289	1	1	0	0	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF597_chr16_3427414_3448504	0/1	t0001	4212	170	12	41	87	11	18	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0002	4212	79	23	12	31	3	10	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0003	4211	26	9	2	15	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	1/0	t0004	4209	21	3	5	8	0	4	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0005	4211	14	0	0	10	0	4	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0006	4212	11	8	0	1	0	2	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0007	4211	10	9	1	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0008	4212	9	7	2	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0009	4212	8	8	0	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0010	4212	4	0	3	0	1	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0011	4212	4	0	3	0	1	0	copy fasta	ZNF597	chr16	3427414	3448504