JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF597_chr16_3427414_3448504	0/0	t0012	4212	4	0	2	1	0	1	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0013	4212	3	3	0	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0014	4208	3	2	1	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0015	4211	3	3	0	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0016	4212	3	0	0	3	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0017	4212	2	1	1	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0018	4211	2	2	0	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0019	4212	2	2	0	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0020	4212	2	0	0	2	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0021	4212	2	0	0	2	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0022	4212	2	0	0	2	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0023	4213	1	1	0	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0024	4211	1	0	0	1	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0025	4211	1	1	0	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0026	4211	1	0	0	1	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0027	4209	1	0	1	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0028	4211	1	1	0	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0029	4209	1	0	0	1	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0030	4209	1	0	1	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0031	4212	1	0	1	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0032	4212	1	1	0	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0033	4213	1	0	1	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0034	4212	1	0	0	1	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0035	4212	1	1	0	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0036	4212	1	1	0	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0037	4212	1	1	0	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0038	4212	1	0	0	0	0	1	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0039	4211	1	0	0	1	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0040	4211	1	0	0	1	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0041	4212	1	1	0	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0042	4212	1	0	0	1	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0043	4212	1	0	1	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0044	4212	1	0	0	1	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0045	4212	1	0	0	1	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0046	4212	1	0	0	1	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0047	4211	1	0	0	1	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	t0048	4212	1	0	0	1	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF599_chr19_34753073_34778215	1/1	t0001	1336	368	56	63	199	13	35	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	t0002	1336	19	8	5	0	4	2	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	t0003	1335	11	0	1	8	0	2	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	t0004	1336	6	0	0	6	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	t0005	1336	6	5	1	0	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	t0006	1336	4	4	0	0	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	t0007	1336	3	3	0	0	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	t0008	1336	3	0	0	3	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	t0009	1336	2	2	0	0	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	t0010	1336	2	0	0	2	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	t0011	1336	1	1	0	0	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	t0012	1336	1	0	0	0	1	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	t0013	1336	1	1	0	0	0	0	copy fasta	ZNF599	chr19	34753073	34778215