JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF600_chr19_52759184_52791791	0/0	t0048	2240	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0049	2241	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0050	2241	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0051	2241	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0052	2241	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0053	2241	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0054	2239	1	0	1	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0055	2241	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0056	2240	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0057	2241	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0058	2240	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0059	2241	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0060	2242	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0061	2243	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0062	2244	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0063	2243	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0064	2243	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0065	2242	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0066	2243	1	0	0	0	0	1	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0067	2244	1	0	1	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0068	2242	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0069	2244	1	0	1	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0070	2244	1	0	1	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0071	2243	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0072	2243	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0073	2243	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0074	2241	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0075	2240	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0076	2242	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0077	2237	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0078	2236	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0079	2237	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0080	2237	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0081	2237	1	0	1	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0082	2241	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0083	2241	1	0	1	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0084	2241	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0085	2241	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0086	2241	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0087	2241	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0088	2240	1	0	1	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0089	2240	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0090	2241	1	0	0	0	1	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0091	2240	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0092	2241	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0093	2240	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0094	2239	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0095	2242	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0096	2241	1	0	0	0	0	1	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0097	2241	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791