JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF600_chr19_52759184_52791791	0/0	t0098	2241	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0099	2241	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0100	2240	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0101	2241	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0102	2240	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0103	2242	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0104	2243	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0105	2244	1	0	0	0	0	1	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0106	2242	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0107	2243	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0108	2243	1	0	1	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0109	2242	1	0	0	1	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	t0110	2243	1	1	0	0	0	0	copy fasta	ZNF600	chr19	52759184	52791791
ZNF605_chr12_132913306_132961306	0/0	t0001	7424	15	0	3	12	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0002	7417	13	2	3	5	1	2	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0003	7417	7	4	3	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0004	7414	7	0	2	3	1	1	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/1	t0005	7417	6	0	1	2	2	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0006	7416	5	0	2	2	0	1	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0007	7425	5	1	1	3	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0008	7424	5	5	0	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0009	7424	4	0	0	4	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0010	7417	4	4	0	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0011	7417	3	0	3	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	1/0	t0012	7417	3	2	0	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0013	7415	3	1	2	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0014	7417	3	3	0	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0015	7418	2	1	1	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0016	7417	2	2	0	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0017	7414	2	2	0	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0018	7401	2	2	0	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0019	7418	1	1	0	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0020	7418	1	1	0	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0021	7417	1	0	0	1	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0022	7418	1	0	0	1	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0023	7418	1	0	0	0	0	1	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0024	7418	1	0	0	0	0	1	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0025	7417	1	0	1	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0026	7418	1	0	0	0	0	1	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0027	7418	1	1	0	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0028	7417	1	1	0	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0029	7418	1	1	0	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0030	7416	1	0	0	0	0	1	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0031	7416	1	0	1	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0032	7416	1	0	0	0	0	1	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0033	7416	1	0	1	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0034	7416	1	0	0	0	0	1	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0035	7414	1	0	0	0	1	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0036	7414	1	0	0	0	1	0	copy fasta	ZNF605	chr12	132913306	132961306
ZNF605_chr12_132913306_132961306	0/0	t0037	7424	1	0	1	0	0	0	copy fasta	ZNF605	chr12	132913306	132961306