JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF607_chr19_37691371_37724761	0/0	t0005	2237	16	3	10	0	1	2	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	t0006	2237	10	0	4	6	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	t0007	2237	8	0	0	8	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	t0008	2237	5	4	1	0	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	t0009	2233	4	4	0	0	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	t0010	2237	3	0	0	3	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	t0011	2237	2	0	0	2	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	t0012	2237	2	2	0	0	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	t0013	2233	2	2	0	0	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	t0014	2233	2	2	0	0	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	t0015	2237	1	1	0	0	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	t0016	2237	1	0	0	1	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	t0017	2237	1	0	0	1	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	t0018	2237	1	0	0	1	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	t0019	2237	1	0	0	1	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/0	t0020	2237	1	0	0	1	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF607_chr19_37691371_37724761	0/1	t0021	2237	1	0	0	0	0	0	copy fasta	ZNF607	chr19	37691371	37724761
ZNF608_chr5_124631915_124751639	0/0	t0001	1619	113	20	21	60	4	8	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	t0002	1616	88	33	14	28	2	11	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	t0003	1619	30	0	14	8	1	7	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	1/1	t0004	1614	30	13	6	0	3	6	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	t0005	1616	16	2	0	11	0	3	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	t0006	1615	11	6	4	1	0	0	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	t0007	1616	5	0	4	0	0	1	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	t0008	1618	3	3	0	0	0	0	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	t0009	1616	2	0	2	0	0	0	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	t0010	1617	2	2	0	0	0	0	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	t0011	1616	1	0	1	0	0	0	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	t0012	1614	1	1	0	0	0	0	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	t0013	1615	1	0	0	1	0	0	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	t0014	1615	1	0	0	1	0	0	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	t0015	1616	1	1	0	0	0	0	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	t0016	1614	1	1	0	0	0	0	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	t0017	1619	1	0	0	1	0	0	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	t0018	1618	1	0	0	1	0	0	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	t0019	1616	1	1	0	0	0	0	copy fasta	ZNF608	chr5	124631915	124751639
ZNF608_chr5_124631915_124751639	0/0	t0020	1614	1	1	0	0	0	0	copy fasta	ZNF608	chr5	124631915	124751639
ZNF609_chr15_64455578_64691068	0/1	t0001	4771	62	16	10	16	5	14	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	1/0	t0002	4771	40	23	0	5	1	10	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	t0003	4771	24	20	4	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	t0004	4771	6	0	4	0	1	1	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	t0005	4772	6	0	1	1	1	3	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	t0006	4771	4	4	0	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	t0007	4770	4	4	0	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	t0008	4777	3	3	0	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	t0009	4771	3	3	0	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	t0010	4771	3	3	0	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	t0011	4770	3	3	0	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	t0012	4771	2	2	0	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	t0013	4772	2	1	0	0	0	1	copy fasta	ZNF609	chr15	64455578	64691068