JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF609_chr15_64455578_64691068	0/0	t0014	4771	1	1	0	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	t0015	4771	1	1	0	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	t0016	4770	1	1	0	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	t0017	4771	1	0	0	0	0	1	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	t0018	4771	1	1	0	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	t0019	4771	1	1	0	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	t0020	4771	1	1	0	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	t0021	4771	1	0	1	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	t0022	4771	1	1	0	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	t0023	4770	1	1	0	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	t0024	4771	1	1	0	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	t0025	4772	1	1	0	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	t0026	4772	1	0	1	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF609_chr15_64455578_64691068	0/0	t0027	4771	1	0	1	0	0	0	copy fasta	ZNF609	chr15	64455578	64691068
ZNF610_chr19_52331243_52372778	0/0	t0001	1536	80	19	12	34	3	12	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	t0002	1536	68	13	18	18	2	17	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	1/0	t0003	1533	57	6	9	38	0	3	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	t0004	1536	49	9	15	20	4	1	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	t0005	1536	39	11	7	17	2	2	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/1	t0006	1536	37	12	3	19	1	1	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	t0007	1536	33	10	6	15	1	1	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	t0008	1533	23	3	0	17	1	2	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	t0009	1535	10	0	5	0	1	4	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	t0010	1536	9	8	1	0	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	t0011	1535	5	0	0	2	1	2	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	t0012	1536	4	0	0	4	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	t0013	1535	3	3	0	0	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	t0014	1535	1	0	0	1	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	t0015	1533	1	0	0	1	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	t0016	1535	1	1	0	0	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	t0017	1537	1	0	0	0	0	1	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	t0018	1536	1	0	1	0	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	t0019	1536	1	0	0	1	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	t0020	1535	1	0	0	1	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	t0021	1536	1	1	0	0	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	t0022	1536	1	1	0	0	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	t0023	1536	1	1	0	0	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF610_chr19_52331243_52372778	0/0	t0024	1535	1	0	1	0	0	0	copy fasta	ZNF610	chr19	52331243	52372778
ZNF611_chr19_52697813_52740044	1/0	t0001	2390	94	1	12	63	4	13	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0002	2388	89	5	16	55	5	8	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/1	t0003	2395	34	0	13	14	2	4	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0004	2388	23	11	5	4	1	2	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0005	2390	21	1	7	2	3	8	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0006	2387	19	13	4	2	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0007	2389	13	0	0	12	0	1	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0008	2390	11	0	0	9	0	2	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0009	2391	10	10	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0010	2390	10	9	1	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0011	2392	7	6	1	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044
ZNF611_chr19_52697813_52740044	0/0	t0012	2388	7	7	0	0	0	0	copy fasta	ZNF611	chr19	52697813	52740044